PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0004ss00310.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 332aa MW: 37524.5 Da PI: 7.9051 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.5 | 1.1e-31 | 187 | 242 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+e+LGGs+ AtPk+i+elm v+gLt+++vkSHLQkYRl+ Vang0004ss00310.4 187 KQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLH 242 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.068 | 184 | 244 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-17 | 185 | 245 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-29 | 186 | 245 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-25 | 187 | 242 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.7E-8 | 189 | 240 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGCVYFLFIF QWTNISTVLA FMVAAISALK EELAKCRAFK AEPVLEEFIP LKREYEEKED 60 NEKEEECRNK NDWVSSFQLW NTEDEAYNRS KACRLEQKQK KSKGEERKSM EKDYFQHDSN 120 RNVERGFVMP LSTYLATEEE CVVDGLSLKT PATAVKNTRE GRGSRISSCR VVSSAPSPML 180 LPQSGRKQRR CWSPELHHRF VKALEELGGS QAATPKQIRE LMRVDGLTND EVKSHLQKYR 240 LHTRRVPAAT AANCSISGAD LGGLWMHKES LKGTSYCSPQ GPLQFATQSG DTTSTTEGDN 300 MIDDDVMSRC FLTVNFADKI RGVSHLLKNN T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-14 | 187 | 240 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-14 | 187 | 240 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-14 | 187 | 240 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-14 | 187 | 240 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-14 | 187 | 240 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-14 | 187 | 240 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-14 | 187 | 240 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-14 | 187 | 240 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-14 | 187 | 240 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-14 | 187 | 240 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-14 | 187 | 240 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-14 | 187 | 240 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0004ss00310.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426146.1 | 0.0 | PREDICTED: myb family transcription factor EFM isoform X1 | ||||
TrEMBL | A0A0L9UUK3 | 0.0 | A0A0L9UUK3_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA07G29490.1 | 1e-139 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 6e-38 | G2-like family protein |