PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0004ss00310.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 327aa MW: 37125.7 Da PI: 6.4102 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 68.9 | 8e-22 | 187 | 231 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 k+r++W+peLH+rFv+a+e+LGGs+ AtPk+i+elm v+gLt+++ Vang0004ss00310.3 187 KQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDE 231 79****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.53E-9 | 185 | 238 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-18 | 186 | 239 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.4E-16 | 187 | 231 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGCVYFLFIF QWTNISTVLA FMVAAISALK EELAKCRAFK AEPVLEEFIP LKREYEEKED 60 NEKEEECRNK NDWVSSFQLW NTEDEAYNRS KACRLEQKQK KSKGEERKSM EKDYFQHDSN 120 RNVERGFVMP LSTYLATEEE CVVDGLSLKT PATAVKNTRE GRGSRISSCR VVSSAPSPML 180 LPQSGRKQRR CWSPELHHRF VKALEELGGS QAATPKQIRE LMRVDGLTND EKYRLHTRRV 240 PAATAANCSI SGADLGGLWM HKESLKGTSY CSPQGPLQFA TQSGDTTSTT EGDNMIDDDI 300 KLEEFHIYSR TTHDYIKEDG SSERGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0004ss00310.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519321.1 | 0.0 | transcription factor HHO2 isoform X1 | ||||
TrEMBL | A0A0S3T1Q6 | 0.0 | A0A0S3T1Q6_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA07G29490.1 | 1e-132 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 3e-31 | G2-like family protein |