PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0002ss01450.1 | ||||||||
Common Name | LR48_Vigan06g068800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 283aa MW: 31852.8 Da PI: 8.4399 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 39 | 1.7e-12 | 21 | 46 | 1 | 26 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 kprlrWt +LH+rFv+av++LGG++k Vang0002ss01450.1 21 KPRLRWTADLHDRFVDAVTKLGGPDK 46 79**********************98 PP | |||||||
2 | G2-like | 49 | 1.4e-15 | 59 | 88 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk++l+lm++kgLtl+h+kSHLQkYRl Vang0002ss01450.1 59 EATPKSVLRLMGLKGLTLYHLKSHLQKYRL 88 7****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 18 | 89 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-18 | 21 | 89 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 4.66E-13 | 21 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 23 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.7E-23 | 132 | 178 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MEGGGRESYN GLVMTMTRDP KPRLRWTADL HDRFVDAVTK LGGPDKNDIN LKCFVFCSEA 60 TPKSVLRLMG LKGLTLYHLK SHLQKYRLGQ QTRKQNEEMN KENSRCSFVN FSTRSSGPNT 120 TYRGDNEGGE TPIAEALRHQ IEVQKRLEEQ LEVQKKLQMR IEAQGKYLQA VLEKAQRTLS 180 LDGSGGLEAS RAQLTEFNSA LSNFMENMNK DSKENIIEVT GFYNKNHGSA FHYEEVGREQ 240 NRDQKPKIDG GSIQFDLNIK GSNDLMSSGG AEMDVNMISY RG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-15 | 21 | 87 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-15 | 21 | 87 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-15 | 21 | 87 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-15 | 21 | 87 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0002ss01450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426744.1 | 0.0 | PREDICTED: myb family transcription factor PHL11 | ||||
Swissprot | C0SVS4 | 7e-77 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A0L9US08 | 0.0 | A0A0L9US08_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T409 | 0.0 | A0A0S3T409_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158199.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-78 | G2-like family protein |
Publications ? help Back to Top | |||
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