PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678472737
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 178aa    MW: 19942.4 Da    PI: 9.1145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678472737genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-1895146256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr+++ +g+++AeIrdp     +  r++lg+++t  +Aa+a++ a+ k++g+
  678472737  95 HYRGVRRRP-WGKYAAEIRDPLR---KgSRVWLGTYDTDVDAARAYDCAAFKMRGA 146
                7********.**********732...24**********99**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-3294154IPR001471AP2/ERF domain
PfamPF008474.1E-1395145IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2395155IPR016177DNA-binding domain
PROSITE profilePS5103224.13195153IPR001471AP2/ERF domain
SMARTSM003802.6E-3495159IPR001471AP2/ERF domain
PRINTSPR003672.5E-1396107IPR001471AP2/ERF domain
CDDcd000182.04E-22103153No hitNo description
PRINTSPR003672.5E-13135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENQDEFSAL EFIRHHLLED FPAAESFFGS LAALNPSLFE DNSNSPWSLT GETAVTRHQG  60
GSNPKQEAVE LPPQPPRVKS EAECELMVPM NGRRHYRGVR RRPWGKYAAE IRDPLRKGSR  120
VWLGTYDTDV DAARAYDCAA FKMRGAKAIL NFPMDAGKYG PPANVGRRKR GNHVVTTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2794154464ATERF1
3gcc_A7e-2794154464ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678472737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101099.14e-54ethylene-responsive transcription factor ERF107
TrEMBLQ84XB07e-51Q84XB0_SOLLC; Ethylene response factor 4
STRINGSolyc05g052030.1.11e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.16e-36ERF family protein