PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678471355
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 314aa    MW: 35162.4 Da    PI: 6.1819
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678471355genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.6e-191663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l+d+v+ +G g+W++++r  g+ R++k+c++rw +yl
        678471355 16 RGLWSPEEDQKLIDYVTAHGHGCWSSVPRLAGLQRCGKSCRLRWINYL 63
                     788*******************************************97 PP
2Myb_DNA-binding47.25.1e-1569111145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg++T++E  l++++++ lG++ W+  a++++ gRt++++k++w+
        678471355  69 RGNFTPQEAALIIELHRILGNR-WSQMAKYLP-GRTDNEVKNFWN 111
                      89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-26766IPR009057Homeodomain-like
PROSITE profilePS5129424.5441167IPR017930Myb domain
SuperFamilySSF466891.68E-2914110IPR009057Homeodomain-like
SMARTSM007174.5E-131565IPR001005SANT/Myb domain
PfamPF002493.5E-161663IPR001005SANT/Myb domain
CDDcd001671.20E-111963No hitNo description
Gene3DG3DSA:1.10.10.609.3E-2567118IPR009057Homeodomain-like
PROSITE profilePS5129418.82868118IPR017930Myb domain
SMARTSM007177.8E-1568116IPR001005SANT/Myb domain
PfamPF002491.7E-1369112IPR001005SANT/Myb domain
CDDcd001678.07E-1171111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
LMASHHTCCD RQKVNRGLWS PEEDQKLIDY VTAHGHGCWS SVPRLAGLQR CGKSCRLRWI  60
NYLRPDVKRG NFTPQEAALI IELHRILGNR WSQMAKYLPG RTDNEVKNFW NSSIKKKLLA  120
HARHFRPSDL YFAARSHQDP SICSESSSSS STMLPNPHVD QLFMPPESAT APLYDPTDSS  180
LGSMVNALES SPSLVTVSKE LTHCDFGPWA SPSDQSGEKD EGAIFPFEDH RSYDLDKEIL  240
EALLPELNRE ESSSFTRCFR SEYTGGYLSG CEEMHPYHID NITALMANFA QTGAPATGNS  300
LVPEFPPPSD WQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31161187108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678471355
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072535.11e-89transcription factor MYB39
TrEMBLS8BS031e-93S8BS03_9LAMI; Uncharacterized protein
STRINGGLYMA13G42431.16e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-71myb domain protein 26