PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678470307

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

MYB_related

Protein Properties

Length: 97aa MW: 10685.4 Da PI: 4.6511

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678470307	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.9	1.8e-11	11	53	4	44
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT + d+++ +a +G + +W++Ia+++g g++ ++k+++ 678470307 11 WTWDQDKQFERALVTYGDNhpnRWEKIAAEVG-GKSIDDVKHHY 53 ***************99*********.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	8.4E-8	7	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-5	11	55	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-9	11	53	IPR001005	SANT/Myb domain
CDD	cd00167	1.39E-9	11	57	No hit	No description
PROSITE profile	PS50090	6.922	11	57	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.87E-12	11	65	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MPAQESRSLI WTWDQDKQFE RALVTYGDNH PNRWEKIAAE VGGKSIDDVK HHYDLLLEDV 60 NRIESGFVQL PCYSSGSDGS ASQEGRKGGG SVAGGEX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	5e-16	11	86	11	86	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678470307

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070471.1	6e-34	transcription factor SRM1
Refseq	XP_011070472.1	6e-34	transcription factor SRM1
Refseq	XP_020547442.1	6e-34	transcription factor SRM1
Refseq	XP_020547443.1	6e-34	transcription factor SRM1
Swissprot	Q9FNN6	2e-22	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A4D8Z8S9	5e-32	A0A4D8Z8S9_SALSN; Uncharacterized protein
STRING	Migut.E00676.1.p	6e-28	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA202	24	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	7e-25	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]