PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678470253
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 341aa    MW: 38050.6 Da    PI: 4.7309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678470253genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19107156255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ +++++g
  678470253 107 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDEEARRIRG 156
                69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-22107164IPR016177DNA-binding domain
SMARTSM003801.4E-37107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32107165IPR001471AP2/ERF domain
PROSITE profilePS5103223.854107164IPR001471AP2/ERF domain
CDDcd000181.49E-32107165No hitNo description
PRINTSPR003679.5E-12108119IPR001471AP2/ERF domain
PfamPF008474.8E-12108156IPR001471AP2/ERF domain
PRINTSPR003679.5E-12130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MCGGAIISDL RLPAKRSLRR LTADLLWGTD LENLPAAKDN GKRSKAVIDL EDDFEADFQG  60
FKDDSEGELE ATVPFASKDL TFKVPGSVDC ESDEECVKTL KRKRKNQYRG IRQRPWGKWA  120
AEIRDPRKGV RVWLGTFNTA EEAARAYDEE ARRIRGKKAK VNFPEGASAP VSSKRAAKQK  180
VSQKENRNYI QQPANQTMDF MKMINNEYYD PLMFLEEKPP MEPKPVMPLD AAHAYFSSDQ  240
GSNSLDCSDF GWGDHCAKTP EISSEICPII EGDHAPFMPE GGIAKTGKMI PRPSLNPQAP  300
FADNSWDASF DSFLEGDTTQ DGDSVDLWSF DDLLDAAGCT F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201061651373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678470253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072679.11e-125ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLA0A2G9GX081e-122A0A2G9GX08_9LAMI; Uncharacterized protein
STRINGMigut.I01124.1.p1e-119(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-59related to AP2 12