PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678470119 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NF-YC | ||||||||
Protein Properties | Length: 161aa MW: 18116.1 Da PI: 6.7977 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 141.3 | 2.4e-44 | 77 | 160 | 1 | 81 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 ql++fw++q i+++ dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+ee+krrtl+k+diaa 678470119 77 QLQQFWANQyeeIDQVRDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEESKRRTLQKNDIAA 160 89******98888999******************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.18E-29 | 60 | 159 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.0E-36 | 92 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.3E-22 | 99 | 159 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEQQGNAQVP GSSSQGLFSM NPYQSNQVTG APLGLSGASA ESPHASGLPA QSAVHLAQQQ 60 LAYQHMHQQQ QQQLQQQLQQ FWANQYEEID QVRDFKNHSL PLARIKKIMK ADEDVRMISA 120 EAPVIFARAC EMFILELTLR AWNHTEESKR RTLQKNDIAA X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-46 | 84 | 160 | 2 | 78 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678470119 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027116212.1 | 2e-71 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027116213.1 | 2e-71 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027116214.1 | 2e-71 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027116215.1 | 2e-71 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q9ZVL3 | 3e-50 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A022RN93 | 9e-68 | A0A022RN93_ERYGU; Uncharacterized protein | ||||
STRING | Migut.G00300.1.p | 1e-68 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 1e-49 | nuclear factor Y, subunit C3 |