PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678469074
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 329aa    MW: 36833.3 Da    PI: 7.3793
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678469074genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.8e-51331591129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhP+deel+++yL   v+g  +++  +i++v+++k+ePw++p+++  + k+wyf++ rd+kyatg r+nrat sgyWkatgkd+++ + kg +v
  678469074  33 LPPGFRFHPRDEELICDYLMSWVSGVGHHF-PMISKVELNKCEPWEIPETACVGGKDWYFYCLRDRKYATGVRTNRATMSGYWKATGKDRPISR-KGIQV 130
                79*************************998.88***************7777799*************************************99.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                g++ktLvfy+grapkg+ktdWvmhe+rle
  678469074 131 GMRKTLVFYQGRAPKGRKTDWVMHEFRLE 159
                **************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5922186IPR003441NAC domain
PROSITE profilePS5100553.87733186IPR003441NAC domain
PfamPF023652.9E-2534158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
AATWSSHPPL PSSPFRAERD SKMSSLSDVE ANLPPGFRFH PRDEELICDY LMSWVSGVGH  60
HFPMISKVEL NKCEPWEIPE TACVGGKDWY FYCLRDRKYA TGVRTNRATM SGYWKATGKD  120
RPISRKGIQV GMRKTLVFYQ GRAPKGRKTD WVMHEFRLEE GPLGPGVNPA EPTAKEDWVL  180
CRVFKKRSDI SSKQQPPVDD LPSPSSSTDH YAALHHRTAA GHHREQVPCF SILTPSQPNP  240
GFSPFTAQPL SQPDAAKFLP HFGAYTASSA LSSDDPAPCN IWEIRSVFNH YAKREASLDH  300
HGAGIYESGE GSCDSYLSEA DLSSMWNQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-52151893171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678469074
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095676.11e-112NAC domain-containing protein 21/22-like
SwissprotQ84TE63e-85NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A022QIZ71e-103A0A022QIZ7_ERYGU; Uncharacterized protein
STRINGMigut.M01566.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.27e-81NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]