PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678468492
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 296aa    MW: 31275.7 Da    PI: 7.9244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678468492genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.41.4e-21145195256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr+++ +g+W+AeIrdp   + +  r++lg+f+tae Aa+a++aa+++++g+
  678468492 145 KYRGVRQRP-WGKWAAEIRDP---N-KaSRVWLGTFDTAEAAARAYDAAALRFRGN 195
                8********.**********9...3.35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-33144204IPR001471AP2/ERF domain
CDDcd000189.24E-22145204No hitNo description
SuperFamilySSF541715.3E-23145204IPR016177DNA-binding domain
PfamPF008474.0E-15145194IPR001471AP2/ERF domain
PROSITE profilePS5103225.554145202IPR001471AP2/ERF domain
SMARTSM003805.2E-37145208IPR001471AP2/ERF domain
PRINTSPR003675.7E-12146157IPR001471AP2/ERF domain
PRINTSPR003675.7E-12168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVLPGWCHPL PLLLPRGVEC RGCSIDILFV AEVANARGGR GYGGVADNAA GEEDTATGAA  60
LDFQYLNQQQ QSDYLLSAIV QSVPSSSSSL PSTPGAASSP SSSGQKRTRD QSSGHGQSSS  120
LKVEPPVEVS CTETTTVAGQ IPQRKYRGVR QRPWGKWAAE IRDPNKASRV WLGTFDTAEA  180
AARAYDAAAL RFRGNRAKLN FQDSATAGDQ PMPRQSVDVI NPTSRATSGD FQPAPPMSPF  240
VGQPPTSSWA AFPAAGYPYL SPPYRASFSG AQPMNLRPQS SPQEGVPGEP PPASDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21144209470ATERF1
3gcc_A3e-21144209470ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678468492
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-25ethylene response factor 110