PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678468222
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family RAV
Protein Properties Length: 331aa    MW: 37906.7 Da    PI: 9.4754
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678468222genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.8e-134593155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s++kGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  678468222 45 SRFKGVVPQP-NGRWGAQIYEK-----HRRIWLGTFNDEDEAAKAYDTAAQRFRG 93
               689***9788.8*********3.....5**********99*************98 PP
2B3102.22.8e-32163264195
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+ tpsdv+k++rlv+pk++ae+h       +g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++   e++l+
  678468222 163 FEKAVTPSDVGKLNRLVIPKQYAEKHfplqignNGNTSKGILLNFEDMTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKDLRAGDVVSFRRSTGPERQLY 262
                89*******************************88999****************************************************8766666666 PP

                EE CS
         B3  94 vk 95 
                + 
  678468222 263 ID 264
                65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.58E-2445100No hitNo description
SuperFamilySSF541718.5E-1745101IPR016177DNA-binding domain
PfamPF008479.7E-84593IPR001471AP2/ERF domain
SMARTSM003801.0E-2746107IPR001471AP2/ERF domain
PROSITE profilePS5103219.78346101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1946101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-39157268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-30162268IPR015300DNA-binding pseudobarrel domain
CDDcd100178.72E-29162254No hitNo description
PROSITE profilePS5086314.621163267IPR003340B3 DNA binding domain
PfamPF023623.6E-28163264IPR003340B3 DNA binding domain
SMARTSM010196.5E-24163269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MQGTYGYETS SIESPSVAPA SVLMSEKSPP RKTPEDSDTR KLPSSRFKGV VPQPNGRWGA  60
QIYEKHRRIW LGTFNDEDEA AKAYDTAAQR FRGRDAVTNF KPLAADETEM VFLNCHSKDE  120
IVDMLRKHTY HDELQQSRKN YGLKYVSHGH GDPSAEECHE ELFEKAVTPS DVGKLNRLVI  180
PKQYAEKHFP LQIGNNGNTS KGILLNFEDM TGKVWRFRYS YWNSSQSYVL TKGWSRFVKE  240
KDLRAGDVVS FRRSTGPERQ LYIDWKPGRN VENNRRIQPV QMMRLFGVNI FEDQRRGGGD  300
GGAGDDDAKR IREMELLGLV CSKKHRIINV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5416026611115DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678468222
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077234.11e-154AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9C6M51e-127RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2G9I1N71e-153A0A2G9I1N7_9LAMI; Uncharacterized protein
STRINGcassava4.1_010157m1e-149(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-129RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]