PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678468169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SBP | ||||||||
Protein Properties | Length: 410aa MW: 45459.4 Da PI: 7.9185 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.1 | 1.7e-40 | 166 | 243 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++ak+yhrrh++Ce hsk+p+v+v+g+e+rfCqqCsrfh+lsefD+ krsCrrrL++hn+rrr++q+ 678468169 166 CCQVEGCNLDLKSAKDYHRRHRICENHSKSPKVVVAGMERRFCQQCSRFHDLSEFDDMKRSCRRRLSDHNARRRRAQP 243 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-34 | 162 | 228 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.402 | 164 | 241 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.71E-38 | 165 | 246 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.8E-32 | 167 | 240 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
KDNLAEFLLR VLYADHVVPE LCLGQKGIAW NPHEKPDKHS IRDCPAPVHL VFSEGNTELK 60 PTEFQEQICF CFPMSSSGSR ALCGNDLGTC SSSKYPISCA AHESTVAHCR SAYEDLFSLH 120 NLGGTLASPP ACSTGLRLSR PRAKSSVSSS PMKRSRASYH NLQNPCCQVE GCNLDLKSAK 180 DYHRRHRICE NHSKSPKVVV AGMERRFCQQ CSRFHDLSEF DDMKRSCRRR LSDHNARRRR 240 AQPESFQLIS QGLPSAFYGH KIEHDLLFNG LPIPQTGAVD RTLCFSGDET LQSISGVHLD 300 STRNIMDQSS QMPNANSPII PDLLSTAPSL LSSSPWTLNE SETHHAQGLV PGNYIPTIRH 360 FDSESQPLPL FHPNHSPISV PIPLMNTIAT ADPPPAYRLF KSGNLFLGNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-28 | 167 | 240 | 11 | 84 | squamosa promoter binding protein-like 4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678468169 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093932.1 | 2e-72 | squamosa promoter-binding-like protein 12 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13644 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 1e-42 | squamosa promoter binding protein-like 2 |