PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467734
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 165aa    MW: 17962.3 Da    PI: 9.1969
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467734genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260766.8e-242102196
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C + Cvl+  +     p++q++++++++k++G++ +l+ll+++p e r+++ +sl+ eA+ r+ +Pv G+vg++ +++ + ++ +++++
  678467734   2 SCNGCRVLRKACDDRCVLRDALqsiesPQAQANATQFLAKFYGRTGLLNLLRQAPAESRSEVCRSLLSEACGRVINPVDGSVGLYASGEGRHCEDAVQAV 101
                6*********************9999999**********************************************************9999988887776 PP

     DUF260  96 l 96 
                l
  678467734 102 L 102
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.5281107IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-20299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSCNGCRVLR KACDDRCVLR DALQSIESPQ AQANATQFLA KFYGRTGLLN LLRQAPAESR  60
SEVCRSLLSE ACGRVINPVD GSVGLYASGE GRHCEDAVQA VLDGTPLLKR VTEDGKSEWQ  120
FPVVPLVGSE IRRHNSSFRS RNKTQRRRVK GDASSSVSPP SSSPT
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467734
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070804.11e-48LOB domain-containing protein 40-like
SwissprotQ9M8861e-41LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2G9HYG45e-47A0A2G9HYG4_9LAMI; Uncharacterized protein
STRINGSolyc05g009320.2.15e-45(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-44LOB domain-containing protein 41