PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678467723

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SRS

Protein Properties

Length: 296aa MW: 31261.7 Da PI: 8.4965

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678467723	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	202.9	9.1e-63	97	246	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss 104 asCqdCGnqak+dC+h+RCRtCCksrgfdC+thvkstWvpaa+rr+r ++ ++++s +++++ as+ ++++++++++ + s + s ++ l ss 678467723 97 MASCQDCGNQAKRDCSHQRCRTCCKSRGFDCTTHVKSTWVPAARRRDRAAASSQSTSGSKKQKLGGASETTNTTSASNTTPTRSFDTISIQQGGGLGESS 196 579*******************************************99999999988888877778888887778888888888889999999* PP DUF702 105 lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +P +v+++avf+cvrv+++dd+ +++aYq++v igGhvf+G+Lyd+G+e+ 678467723 197 FPGQVRAPAVFKCVRVTALDDDADQYAYQAVVRIGGHVFRGFLYDHGVEA 246 *********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.3E-58	98	245	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.0E-26	99	141	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.3E-27	197	244	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MWSSGVGGSR HGVPPEFFFV APEGVSTFDP NVAIGVIPLL TAAPCHAPTL QASEEGMSAR 60 RSSIGFGMHL WQQQQQGQRL SSSSSTKPII PEASNAMASC QDCGNQAKRD CSHQRCRTCC 120 KSRGFDCTTH VKSTWVPAAR RRDRAAASSQ STSGSKKQKL GGASETTNTT SASNTTPTRS 180 FDTISIQQGG GLGESSFPGQ VRAPAVFKCV RVTALDDDAD QYAYQAVVRI GGHVFRGFLY 240 DHGVEAREGL PNLPDLHLSG GNTNNAASSS HRAPLPADIY AGGGGMEVTK YGNPLN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678467723

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838439.1	2e-90	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-64	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A022R8A6	8e-89	A0A022R8A6_ERYGU; Uncharacterized protein
STRING	Migut.N02371.1.p	5e-90	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	4e-41	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]