PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467282
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 733aa    MW: 79229.5 Da    PI: 6.2349
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467282genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.11.3e-953747322374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNq 100
                ++lL+++Ae v++g+l la+ +Larl+++ sp g p+qR+a+y +eAL+  l+ s++++ + l +++++s+ + + ++ a+k fs++sP++ fs++t+Nq
  678467282 374 IDLLYKAAELVEAGNLVLAHGILARLNHQLSPIGIPFQRAAFYCKEALQMLLHCSSNNVDNPLsTMTNSSPFSIIFRIGAYKSFSDISPLVHFSNFTCNQ 473
                689***************************************************9****999944455555669************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                a+lea+eg +r+Hi+Dfdi +G+QW++L+q+ a R+ g+ s++iT+++sp++++  el  ++e+L +fA+ + +++ f+v+  +     +l++ ++++ +
  678467282 474 AVLEALEGFDRIHIVDFDIAYGGQWASLIQEVAMRSPGSTSMKITAIVSPSTHDPLELGLIRENLIQFAKDVSISLTFEVMCID-----SLSSGSWSESD 568
                ********************************************************************************7433.....345558999** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                a+aVnl +   ++ +++ s++     +L++vk+lsPk+v+ +++ +d+++ sF+++++++l+ ++ l++s++a   +++++ +k+Er+l++++i+ +v  
  678467282 569 AVAVNLPV--ASVANSQFSMPL----ILRFVKQLSPKIVISTDRGCDRTDLSFANHVIHTLHSHTNLLESIDAA-NAQADALQKIERFLIQPAIERIVLS 661
                *******9..556656777777....*********************************************887.5788999****************99 PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +       ++t ++Wr+ + +aGF+pvp+s+ a++qa++++++++++g+ +e++++slvl+Wk+++Lv+ SaWr
  678467282 662 RFGT---PTKTTQHWRSIFLSAGFSPVPFSNLAESQAECVIKRTPVRGFLIEKRQASLVLCWKRKELVASSAWR 732
                8777...789999************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.509347712IPR005202Transcription factor GRAS
PfamPF035144.4E-93374732IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MKGMPLPFDF EGKGVLDLDL IVKNRTFFSE SGGDLLQRSN CSGFGFGEPT SVLDSVTTPS  60
RPTSSTTLSS SLGGGGGSTG AGGGAASTDT AAKWQRDSTA TSSNAVGKVD SGGLLTVPQS  120
MEFEGAGGGN MEKFAMEDWE SVLSESAAVP PSQEQSMLRW IMGDNEDPAM GNLNKALQIS  180
TGGVFPAAEF DFSGGYTAVD QMPTLPIFLN NRSSSEKIAS LSPNSVSSNP SSSFKFSPIS  240
QAVLHPSGSL SFHHQIALDA SSDTKPPVTN SSLLVNQQSQ NPSCFFPLSY SQQQEHSIFV  300
SPPAKRQNFG GFADVGLDSA GQISKGSFMD SGHPLFLQQQ FSPQLQFLPS YIHQRHKEKP  360
KLTVRDDFGQ QATIDLLYKA AELVEAGNLV LAHGILARLN HQLSPIGIPF QRAAFYCKEA  420
LQMLLHCSSN NVDNPLSTMT NSSPFSIIFR IGAYKSFSDI SPLVHFSNFT CNQAVLEALE  480
GFDRIHIVDF DIAYGGQWAS LIQEVAMRSP GSTSMKITAI VSPSTHDPLE LGLIRENLIQ  540
FAKDVSISLT FEVMCIDSLS SGSWSESDAV AVNLPVASVA NSQFSMPLIL RFVKQLSPKI  600
VISTDRGCDR TDLSFANHVI HTLHSHTNLL ESIDAANAQA DALQKIERFL IQPAIERIVL  660
SRFGTPTKTT QHWRSIFLSA GFSPVPFSNL AESQAECVIK RTPVRGFLIE KRQASLVLCW  720
KRKELVASSA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3139173221375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090295.10.0scarecrow-like protein 6
SwissprotO813161e-132SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2G9GWL50.0A0A2G9GWL5_9LAMI; Uncharacterized protein
STRINGSolyc01g090950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62532235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-129GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]