PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467248
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 334aa    MW: 34943.4 Da    PI: 7.7472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467248genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.1e-21141190255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp     + +r++lg++gtae+Aa+a++aa+ +++g
  678467248 141 KYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTYGTAEDAARAYDAAAFRFRG 190
                8********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-32140199IPR001471AP2/ERF domain
CDDcd000187.24E-22141200No hitNo description
SuperFamilySSF541712.81E-22141199IPR016177DNA-binding domain
PfamPF008477.9E-15141190IPR001471AP2/ERF domain
PROSITE profilePS5103225.396141198IPR001471AP2/ERF domain
SMARTSM003803.5E-37141204IPR001471AP2/ERF domain
PRINTSPR003673.7E-11142153IPR001471AP2/ERF domain
PRINTSPR003673.7E-11164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPREQEASSS STGTGVGGGG GFDEGLLGMQ RVRGEEEQQD YLLSAVVAPM TVLSGPGYHR  60
ETSEMVSALT HVVASTGVTS TTAPLDSPSA YSCSSSGSIP FSNQKRRRST QQPEASEGDL  120
GSTSDDRPNA GGGSAGGTRR KYRGVRQRPW GKWAAEIRDP QKAARVWLGT YGTAEDAARA  180
YDAAAFRFRG SRAKLNFPET ARALHPSPTP VAISPTPPLP AATPPSLLHD STGRDYLEYS  240
RILQSSGGDF QSLPTPNAFQ QMLYGSLSSY GVLHSQQALN TPNSPSSTGA PAPAFPQFQM  300
LYPPAAPSTP HEPGSRSGNP PADPGGPPPP SSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-24140198463ATERF1
3gcc_A6e-24140198463ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101230.16e-44ethylene-responsive transcription factor ABR1-like
TrEMBLA0A4D8ZF014e-40A0A4D8ZF01_SALSN; EREBP-like factor
TrEMBLA0A4D9A6U82e-39A0A4D9A6U8_SALSN; EREBP-like factor
STRINGXP_006427894.12e-36(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-22ERF family protein