PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678467179 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25259.1 Da PI: 8.7208 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 77 | 3.3e-24 | 2 | 105 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+ + ++q++++++++k++G+s +++ll+ + + +r+++ +sl+yeA+ r+ P+yG+vg++ ++++q +++++e 678467179 2 SCNGCRVLRKACPQSCALRDSLkwiqsDEAQANATRFLAKFYGRSGLINLLAGAgTRADRRQISQSLLYEACGRIISPIYGSVGLFADGKWQRCRSAVES 101 6*********************9987666789*******************99846666*************************************9998 PP DUF260 95 allk 98 +l + 678467179 102 VLNG 105 8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.452 | 1 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-20 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSCNGCRVLR KACPQSCALR DSLKWIQSDE AQANATRFLA KFYGRSGLIN LLAGAGTRAD 60 RRQISQSLLY EACGRIISPI YGSVGLFADG KWQRCRSAVE SVLNGTPLLK VITVEGETEK 120 ELAVSPTQAC EIRHVSKESI VDRHIRTRKR ARKDTSMSQS ELHQLLSVVN LPVPQEKFTL 180 TGWDCKEMNR SKPFPVETTP PGVEVSPHCG GSIELELTLG PSHLLLHCS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678467179 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070804.1 | 5e-62 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9ZW96 | 3e-44 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | A0A022QR01 | 2e-58 | A0A022QR01_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E00341.1.p | 3e-59 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 1e-46 | LOB domain-containing protein 40 |