PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678466585
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 267aa    MW: 29608.7 Da    PI: 8.6592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678466585genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.6e-171155146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+W++eEd ll ++v  +G+++W++I++ ++  R++k+c++rw +
        678466585 11 RGPWSPEEDHLLQKLVDTHGPRNWSLISKSIP-ARSGKSCRLRWWN 55
                     89******************************.***********65 PP
2Myb_DNA-binding55.61.2e-1765107347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
        678466585  65 AFTPEEDEAILRAHAEFGNK-WATIARLLS-GRTDNAIKNHWNST 107
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.859657IPR017930Myb domain
SuperFamilySSF466892.12E-308104IPR009057Homeodomain-like
SMARTSM007171.9E-131059IPR001005SANT/Myb domain
PfamPF002493.8E-171155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241264IPR009057Homeodomain-like
CDDcd001675.94E-141355No hitNo description
PROSITE profilePS5129424.43258112IPR017930Myb domain
SMARTSM007173.3E-1562110IPR001005SANT/Myb domain
PfamPF002499.0E-1565107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2365111IPR009057Homeodomain-like
CDDcd001676.39E-1365108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MLSPNQHDRI RGPWSPEEDH LLQKLVDTHG PRNWSLISKS IPARSGKSCR LRWWNQLSPQ  60
VEHRAFTPEE DEAILRAHAE FGNKWATIAR LLSGRTDNAI KNHWNSTLKR KCVSMSAEEF  120
KSLEPEALLP PPQKRSASVG PGTFVSPPLN AASPSGSDIS ESNHWGDPVY RRPLPLCVAP  180
LQPDPVTSLT LSLPGSEIKP PGPIPKSLPK PHPPPPPQQA VAAASHLFLP PPDTKFFSQE  240
FLSAMQEIVR TEVRNYMAGM EQNGFCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-37101123105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-37101123105C-Myb DNA-Binding Domain
1msf_C1e-37101123105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678466585
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074411.11e-103transcription factor MYB44-like
SwissprotO231602e-77MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0K1SB761e-104A0A0K1SB76_REHGL; R2R3-MYB protein
STRINGMigut.C00524.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-78myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]