PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465920
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 311aa    MW: 35238.1 Da    PI: 6.0387
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465920genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-15101188184
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                f k+l++sdv+ ++r+vlpkk ae+h    ++k  e+++l + d +g   W +k+++  +++s++yvl+  + +F +a+gL   D ++ ++
  678465920 101 FMKQLKNSDVGVLRRMVLPKKEAEAHlpvlDYK--EGIQLDMIDMDGiHHWCFKYRFwpNNNSRMYVLE-STGDFIHAHGLVKDDYILVYR 188
                89**************************66555..7889********9*******9989999999***9.9***********999987772 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2097196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-16100193IPR015300DNA-binding pseudobarrel domain
CDDcd100179.49E-20100193No hitNo description
PfamPF023623.6E-11101191IPR003340B3 DNA binding domain
SMARTSM010199.9E-12101203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAEPHMSSPF NVYFPNLETS GLNNNRIYLP YSFPQFPPFS SIVPQMENSG DLFSRPGFTV  60
PRGARMPRSR LKRSSLAFLA LPPPPIPPPR AVDRSKLSYL FMKQLKNSDV GVLRRMVLPK  120
KEAEAHLPVL DYKEGIQLDM IDMDGIHHWC FKYRFWPNNN SRMYVLESTG DFIHAHGLVK  180
DDYILVYRYV DDGRYVRGMH PHPLMLASAA HSFLRNVSFQ VIEAKKNREL AAAAAAPVST  240
SSTASTAAAS VDEYAPFTCL PDAFEELDLF YEYYTSFLDD TPLDYVGESI CFPSIEPNSE  300
ATFIDLCNPQ D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-41971961100B3 domain-containing transcription factor FUS3
6j9b_D7e-41971961100B3 domain-containing transcription factor FUS3
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098957.15e-70B3 domain-containing transcription factor FUS3-like
TrEMBLA0A4D9AR644e-73A0A4D9AR64_SALSN; Uncharacterized protein
STRINGMigut.F00019.1.p3e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-43B3 family protein