PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465687
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 380aa    MW: 42618.3 Da    PI: 7.636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465687genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.4e-1756103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEde+lv+ ++++G g+W+++++  g+ R++k+c++rw +yl
        678465687  56 KGLWSPEEDEKLVNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 103
                      678*******************************************97 PP

2Myb_DNA-binding45.71.5e-14109152146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
        678465687 109 RGTFSQEEESLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 152
                      899*******************.*********.*********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2648106IPR009057Homeodomain-like
PROSITE profilePS5129425.31951107IPR017930Myb domain
SuperFamilySSF466891.25E-2954150IPR009057Homeodomain-like
SMARTSM007173.5E-1455105IPR001005SANT/Myb domain
PfamPF002498.1E-1656103IPR001005SANT/Myb domain
CDDcd001672.03E-1259103No hitNo description
Gene3DG3DSA:1.10.10.602.6E-25107158IPR009057Homeodomain-like
PROSITE profilePS5129420.07108158IPR017930Myb domain
SMARTSM007172.3E-13108156IPR001005SANT/Myb domain
PfamPF002492.9E-13109152IPR001005SANT/Myb domain
CDDcd001671.35E-9111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MYVSRLMAIN VNKTPLFIKL APLFLPCLSL PKLSPVPVAS SVMGRHSCCF KQKLRKGLWS  60
PEEDEKLVNH IAKYGHGCWS SVPKLAGLER CGKSCRLRWI NYLRPDLKRG TFSQEEESLI  120
IELHAVLGNR WSQIAAQLPG RTDNEIKNLW NSSLKKKLRQ RGIDPNTHKP LPEIEENAGA  180
PAAVPSSSTK KGVEVSAEGV KNMKSSVSVD DFPALETDEF FGFMTPTAAP AMTSSELLPF  240
NFNNPIHNHP YFTSSPFLPP PPPRMPFSCD DGAWRTHNAA QFFSQSGAVV PCSEIPADIT  300
WNGYLQNQIL SSNLNQNPEN LYTQPKLESN YEEDDSWEWH HHHHHHQNQQ QVSLQESEAV  360
FGKHFPRISA ASATPFGLFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30541585108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159LKKKLRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022895690.17e-93LOW QUALITY PROTEIN: transcription factor MYB61-like
TrEMBLA0A2U1MGG83e-91A0A2U1MGG8_ARTAN; Homeodomain-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.13e-76myb domain protein 61