PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678465687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 380aa MW: 42618.3 Da PI: 7.636 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.4e-17 | 56 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv+ ++++G g+W+++++ g+ R++k+c++rw +yl 678465687 56 KGLWSPEEDEKLVNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 103 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 109 | 152 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ 678465687 109 RGTFSQEEESLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 152 899*******************.*********.*********9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 48 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.319 | 51 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-29 | 54 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 55 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-16 | 56 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.03E-12 | 59 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 107 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.07 | 108 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-13 | 108 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 109 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-9 | 111 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MYVSRLMAIN VNKTPLFIKL APLFLPCLSL PKLSPVPVAS SVMGRHSCCF KQKLRKGLWS 60 PEEDEKLVNH IAKYGHGCWS SVPKLAGLER CGKSCRLRWI NYLRPDLKRG TFSQEEESLI 120 IELHAVLGNR WSQIAAQLPG RTDNEIKNLW NSSLKKKLRQ RGIDPNTHKP LPEIEENAGA 180 PAAVPSSSTK KGVEVSAEGV KNMKSSVSVD DFPALETDEF FGFMTPTAAP AMTSSELLPF 240 NFNNPIHNHP YFTSSPFLPP PPPRMPFSCD DGAWRTHNAA QFFSQSGAVV PCSEIPADIT 300 WNGYLQNQIL SSNLNQNPEN LYTQPKLESN YEEDDSWEWH HHHHHHQNQQ QVSLQESEAV 360 FGKHFPRISA ASATPFGLFS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-30 | 54 | 158 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 153 | 159 | LKKKLRQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678465687 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022895690.1 | 7e-93 | LOW QUALITY PROTEIN: transcription factor MYB61-like | ||||
TrEMBL | A0A2U1MGG8 | 3e-91 | A0A2U1MGG8_ARTAN; Homeodomain-like protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09540.1 | 3e-76 | myb domain protein 61 |