PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465551
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 307aa    MW: 34333.5 Da    PI: 7.6883
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465551genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.7e-082772346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+ E + + +a + +  +   +W+++a++++ g+t  +++ r++ 
        678465551 27 TWTAAENKVFENALAVFDEDtpdRWHKVAAMVP-GKTVVDVIRRYRE 72
                     7******************9*************.***********96 PP
2Myb_DNA-binding46.77.6e-15145189347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
        678465551 145 PWSEEEHKLFLMGLKKYGKGDWRNISRNLVVTRTPTQVASHAQKY 189
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.12376IPR017884SANT domain
SMARTSM007175.8E-92476IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-122681IPR009057Homeodomain-like
PfamPF002492.9E-62773IPR001005SANT/Myb domain
CDDcd001676.85E-72773No hitNo description
Gene3DG3DSA:1.10.10.601.5E-11136195IPR009057Homeodomain-like
PROSITE profilePS5129420.579138194IPR017930Myb domain
SuperFamilySSF466896.88E-16140193IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16141193IPR006447Myb domain, plants
SMARTSM007173.8E-12142192IPR001005SANT/Myb domain
CDDcd001676.75E-11145190No hitNo description
PfamPF002491.4E-12145189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTWEMKILSP TSCFATWLAG DAHRSTTWTA AENKVFENAL AVFDEDTPDR WHKVAAMVPG  60
KTVVDVIRRY RELEDDVSSI EAGLIPVPGY TSSTTTTTMS STNTPFILEW GSVAATATTG  120
FKPCSAARKS TISRSSDHER KKGIPWSEEE HKLFLMGLKK YGKGDWRNIS RNLVVTRTPT  180
QVASHAQKYF IRQLNGGKDK RRASIHDITT LNLEVEASPP ENKKNSPVPA PETQPKFPFF  240
QWSNTTNEEF MMGFGSQNHY FNSIISSASP LEVNSSYCRH VPAQESIYAA EDVGLQHMQS  300
GFQYPNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-16281061187RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465551
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080854.11e-111transcription factor DIVARICATA isoform X1
RefseqXP_020550520.11e-111transcription factor DIVARICATA isoform X2
SwissprotQ8S9H71e-107DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A4D8YRZ71e-106A0A4D8YRZ7_SALSN; Uncharacterized protein
STRINGGorai.009G093700.11e-102(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-97Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]