PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465446
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 163aa    MW: 17851.1 Da    PI: 8.7081
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465446genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260735.7e-23298192
     DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
               +C++C+vlr++C + Cvl+  +     p++q+++++++ k++G++ +++ll+++p e r+++ +sl+ eA+ r+ +Pv G+vg++ +++ + ++ ++
  678465446  2 SCNGCRVLRKACDDRCVLRDALqsiesPEAQANATQFLVKFYGRTGLINLLSQAPAESRSEVCRSLLSEACGRVINPVDGSVGLYASGEGRRCEDAV 98
               6*********************9999999*******************************************************9998877766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.2641107IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-20295IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSCNGCRVLR KACDDRCVLR DALQSIESPE AQANATQFLV KFYGRTGLIN LLSQAPAESR  60
SEVCRSLLSE ACGRVINPVD GSVGLYASGE GRRCEDAVQD VLNGTPLLKR VTEDGRSEWQ  120
FPVLPLVGSE IRRHNSSSGN RNKTQRRRVK DDASRSLPSS SPT
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070804.12e-48LOB domain-containing protein 40-like
SwissprotQ9M8869e-41LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2G9HYG41e-48A0A2G9HYG4_9LAMI; Uncharacterized protein
STRINGSolyc05g009320.2.13e-44(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-43LOB domain-containing protein 41