PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678465297

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 741aa MW: 79575 Da PI: 6.2519

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678465297	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	317.9	2.1e-97	376	740	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +L ++Ae +++g+l+la+ +Larl+++ sp g+p+ R+a++ +eAL+ l+ ++++l + +++ ++ + +++ a+k fse+sP+++f+++t NqaI 678465297 376 AQLHKAAELLHTGNLALAHGILARLNHQLSPIGKPFCRAAFHCKEALQLLLHCTSNKLN-IPYSTALPHLTLFSKIGAYKSFSEISPLVQFANFTSNQAI 474 6899*********************************************99555555.44455555577999********************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.... 198 ea+eg++r+ iiDfdi++G+QW++L+q+La R +g+ps++iT+++sp ++++ el+ t+e+L +fA+e+++++ef+++ ++++l+ +L + p 678465297 475 IEALEGSDRIRIIDFDIGYGGQWASLMQELALRIGGAPSIKITALVSPMTHDQLELSLTRENLIQFAREINISLEFDLV---SIDSLSSGSLLMPPhape 571 **************************************************************************8...666777777755545557 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreiv 295 +Ea+aVnl + +l++ + sl+ vL++vk+lsP++vv +++ +d+++ sF++ +++al+ y++l++sl+a +++++ + + +Er+ll++ i+ 678465297 572 NEAIAVNLPAA--SLVNYQFSLPL----VLRFVKQLSPRIVVSMDRGCDRTDLSFANVVTHALQSYTSLMESLDAAAAAANvpvDSIQRIERFLLQPGIE 665 ****995..55544666666....*****************************************9998888889899999******* PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + ++ e++++Wr+++ +aGF+pv++s++a +qa++++++ ++ g++ve+++ slvl+W++++L+s+SaWr 678465297 666 MLILGRFRA----PEKMQHWRSMFLSAGFSPVTFSHFADAQAECIIKRASVGGFQVEKRQSSLVLCWQRKELISASAWR 740 998887....9***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.912	348	720	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.4E-95	376	740	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
EPTSVLDSVT TPSQLTSSST LSSSLGGGGG GGGGGGGAAS TDSAGVALVS EADPSSKWQQ 60 QDSTTATSTN AGGPGSGHLP IAASLVIEDA VAGSGEHPQR FAMEDWDTVF SESAAVSPSQ 120 EQSILRWFMG DVEDPAVANL NKVLQIGGGG GGGSIMPPAE FDFSGVYGSV DQGFAANHVS 180 ASFMPTLPVF PNNNRSSAEK LGFLPNSTPP NLKLSPNSHS LLCSSPDFNN LGSMAFKHQT 240 PFDSSVEIKP HIFNSGVLMN QQSQNTSFFF PLSYAPQQGQ SSIFHPPQAK RQIAGGLCDG 300 GPHTVGQISK GPFVDTGQHE LCMGRMPLGL QQQVPHQLQF PPNYLPQRPM TEEQKPNFVP 360 LNDLENCHQQ QQSTIAQLHK AAELLHTGNL ALAHGILARL NHQLSPIGKP FCRAAFHCKE 420 ALQLLLHCTS NKLNIPYSTA LPHLTLFSKI GAYKSFSEIS PLVQFANFTS NQAIIEALEG 480 SDRIRIIDFD IGYGGQWASL MQELALRIGG APSIKITALV SPMTHDQLEL SLTRENLIQF 540 AREINISLEF DLVSIDSLSS GSLLMPPHAP ENEAIAVNLP AASLVNYQFS LPLVLRFVKQ 600 LSPRIVVSMD RGCDRTDLSF ANVVTHALQS YTSLMESLDA AAAAANVPVD SIQRIERFLL 660 QPGIEMLILG RFRAPEKMQH WRSMFLSAGF SPVTFSHFAD AQAECIIKRA SVGGFQVEKR 720 QSSLVLCWQR KELISASAWR G

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

EPTSVLDSVT TPSQLTSSST LSSSLGGGGG GGGGGGGAAS TDSAGVALVS EADPSSKWQQ  60
QDSTTATSTN AGGPGSGHLP IAASLVIEDA VAGSGEHPQR FAMEDWDTVF SESAAVSPSQ  120
EQSILRWFMG DVEDPAVANL NKVLQIGGGG GGGSIMPPAE FDFSGVYGSV DQGFAANHVS  180
ASFMPTLPVF PNNNRSSAEK LGFLPNSTPP NLKLSPNSHS LLCSSPDFNN LGSMAFKHQT  240
PFDSSVEIKP HIFNSGVLMN QQSQNTSFFF PLSYAPQQGQ SSIFHPPQAK RQIAGGLCDG  300
GPHTVGQISK GPFVDTGQHE LCMGRMPLGL QQQVPHQLQF PPNYLPQRPM TEEQKPNFVP  360
LNDLENCHQQ QQSTIAQLHK AAELLHTGNL ALAHGILARL NHQLSPIGKP FCRAAFHCKE  420
ALQLLLHCTS NKLNIPYSTA LPHLTLFSKI GAYKSFSEIS PLVQFANFTS NQAIIEALEG  480
SDRIRIIDFD IGYGGQWASL MQELALRIGG APSIKITALV SPMTHDQLEL SLTRENLIQF  540
AREINISLEF DLVSIDSLSS GSLLMPPHAP ENEAIAVNLP AASLVNYQFS LPLVLRFVKQ  600
LSPRIVVSMD RGCDRTDLSF ANVVTHALQS YTSLMESLDA AAAAANVPVD SIQRIERFLL  660
QPGIEMLILG RFRAPEKMQH WRSMFLSAGF SPVTFSHFAD AQAECIIKRA SVGGFQVEKR  720
QSSLVLCWQR KELISASAWR G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-31	380	739	24	377	Protein SCARECROW
5b3h_D	5e-31	380	739	24	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678465297

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090295.1	0.0	scarecrow-like protein 6
TrEMBL	A0A2G9GWL5	0.0	A0A2G9GWL5_9LAMI; Uncharacterized protein
STRING	Migut.B01597.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-128	GRAS family protein