PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678465288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 118aa MW: 13090.6 Da PI: 8.6879 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 8 | 59 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr +++g+++AeIrd +++g +r++lg+++tae+Aa+a+++a+++++g 678465288 8 TKYRGVRP-RSWGKYAAEIRD-TDRG-GARVWLGTYDTAEDAARAYDRAALAMRG 59 69****95.55**********.4544.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.30E-18 | 8 | 68 | No hit | No description |
Pfam | PF00847 | 9.2E-14 | 8 | 59 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 9 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-23 | 9 | 69 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.708 | 9 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-33 | 9 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MEKGKGETKY RGVRPRSWGK YAAEIRDTDR GGARVWLGTY DTAEDAARAY DRAALAMRGQ 60 YAVLNFPHEH GLPGGGSTSG GGRRSICQQE VIEFECVDDS ILEQLLDDEV KRRAKKKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-31 | 9 | 101 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678465288 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546399.1 | 2e-38 | ethylene-responsive transcription factor ERF098 | ||||
Refseq | XP_028203151.1 | 2e-38 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 6e-32 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2G9I9T0 | 3e-38 | A0A2G9I9T0_9LAMI; Uncharacterized protein | ||||
STRING | GLYMA15G17090.1 | 7e-38 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 3e-23 | Ethylene-responsive element binding factor 14 |
Publications ? help Back to Top | |||
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