PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678465147 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GATA | ||||||||
Protein Properties | Length: 244aa MW: 26816.4 Da PI: 9.0238 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.5 | 6.8e-17 | 172 | 208 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg+ 678465147 172 CRHCGISEkfTPMMRRGPEGPRTLCNACGLMWANKGT 208 ******999*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.208 | 72 | 107 | IPR010399 | Tify domain |
SMART | SM00979 | 1.2E-10 | 72 | 107 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.9E-12 | 75 | 106 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.3E-9 | 139 | 171 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 10.09 | 139 | 181 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.959 | 166 | 226 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.9E-12 | 166 | 219 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-12 | 168 | 219 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-15 | 171 | 213 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.79E-14 | 171 | 214 | No hit | No description |
Pfam | PF00320 | 8.2E-15 | 172 | 208 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 172 | 199 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MNVIHVNEPG MSNYLEEELH HHISGRNVND GDDGNIGIGG RGTVDDTVDA DAVGELGNQS 60 DTQGSMVPHV AGGDGSNQLT LTFHGQVYVF DSVSPEKVQA VLLLLGGREV PPSIPAAPMS 120 MSSNRVLSNR PQKLNVPQRL ASLIRFREKR KERNFDKKIR YTVRKEAQDA FCRHCGISEK 180 FTPMMRRGPE GPRTLCNACG LMWANKGTLR DLSKTTHLGS TSMHTKPEEV CLNSRKRKLS 240 LSVG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678465147 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072744.1 | 1e-97 | GATA transcription factor 28 | ||||
Swissprot | Q8GXL7 | 1e-67 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A2G9I2N6 | 1e-93 | A0A2G9I2N6_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I01184.1.p | 1e-88 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2672 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 9e-65 | ZIM-like 1 |
Publications ? help Back to Top | |||
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