PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678465066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23214.7 Da PI: 8.4373 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.9e-20 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp + ++r++lg+f+tae Aa+a++aa+++++g 678465066 20 HYRGVRKRP-WGRYAAEIRDPDK---KRRVWLGTFDTAEAAARAYDAAAREFRG 69 6********.**********843...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.6E-14 | 20 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.184 | 20 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-22 | 20 | 78 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.06E-19 | 20 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-38 | 20 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSMKAKEMEQ SSGGGADEVH YRGVRKRPWG RYAAEIRDPD KKRRVWLGTF DTAEAAARAY 60 DAAAREFRGQ KAKTNFSIPS ETVARSPSQS STVESSCADV NSDTRPQAGL SFTRRPTDSS 120 VVTIAAHHAY PLFASQQAPV MFLQANTNTP QIFLFQALPQ PPIYKTAAAP IVVPGIPRGA 180 PLGTDSDTSS VVDENLYDGP DPRRVLDLDL NQX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 8 | 76 | 1 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 43 | RKRPWGRYAAEIRDPDKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678465066 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100355.1 | 1e-46 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 2e-43 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2G9HCE2 | 2e-53 | A0A2G9HCE2_9LAMI; Uncharacterized protein | ||||
STRING | XP_009772525.1 | 1e-41 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 6e-22 | ethylene response factor 8 |