PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678464901
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 482aa    MW: 51154.4 Da    PI: 7.282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678464901genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.6e-125175226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               +++ C ++++tG+C yG+rC+F+H+
  678464901 51 DEPDCIYYLKTGFCGYGNRCRFNHP 75
               6899********************8 PP
2zf-CCCH38.12.6e-1297121327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C+++++tGtCk+G++Ck++H+p
  678464901  97 QPTCQYYMKTGTCKFGATCKYHHPP 121
                689********************97 PP
3zf-CCCH36.96.2e-12141165327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+++ +tG+Ck+G +CkF+H++
  678464901 141 EKECSYYVKTGICKFGVSCKFHHPQ 165
                689********************97 PP
4zf-CCCH35.12.2e-11308333126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +++++C++++++G Ck+G++Ck++H+
  678464901 308 PGQPECQYYLKNGDCKFGASCKYHHP 333
                5789*********************9 PP
5zf-CCCH34.14.6e-11356380327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C++++++G Ck+G++CkF H++
  678464901 356 ARICSHYSQNGLCKFGPSCKFDHPM 380
                589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2954977IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-54976IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.19794122IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-694121IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-997121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-698121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4100119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6138166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61138166IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5138165IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4144164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.863307335IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6307334IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9309333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5311335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831353381IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-7353380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6355383IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8356380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5357378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MERYSETKAM EGVPMDPVEE WVAPGGETGL EEPMWQLGIG GYPQAYPERP DEPDCIYYLK  60
TGFCGYGNRC RFNHPADRSM VVGSFRSGGE YPERAGQPTC QYYMKTGTCK FGATCKYHHP  120
PKHSAAPVTL NICGYPLRLG EKECSYYVKT GICKFGVSCK FHHPQPSGVH LPVPEHAPGS  180
LDTPTALSAP TIFPAVQAPS GQASQQYGVI QGNWPITRPT MLQGSYVPGS YGSLLFPSGI  240
VSVPWTPYPA APLSSETSPG TQPTVGASPV YGIAHLSPSA TAYSGPYISI AAGVSSSSQK  300
EAAFPERPGQ PECQYYLKNG DCKFGASCKY HHPTEWNSSK ANFTLSPMGL PLRPGARICS  360
HYSQNGLCKF GPSCKFDHPM RTLSYSPSAS SLTGMPVAPY PIGSANATLA PSSASSDLRP  420
DVLSDPFPPE MSSMNASSAS VGSIFSRSGP GSQIGIQHSA QANVASDSGV SLSQGGEAQN  480
SN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678464901
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-141C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2G9GS850.0A0A2G9GS85_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-142C3H family protein