PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678464754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 530aa MW: 59479.9 Da PI: 5.46 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 375.6 | 6.3e-115 | 148 | 530 | 2 | 374 |
GRAS 2 velLlecAeavssgdle..........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +elL++cAe+v + d +++l++ ++e++s +gdp+qRl ay++e+++a+l++++ lyk+l++++ + +sse ++++++ +e++P++ 678464754 148 KELLITCAEVVGEADSIsssrrqswsaVVEELMKLIEERVSVSGDPLQRLGAYMLEGIRAKLLQTGFILYKKLRCNQPVNPSSSELMSYMHVIYEICPYF 247 688999999886644321222334444678888999999***************************************9999****************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 kf+++ I ea+e+e+ +HiiDf+i qG QW++++q+ + Rp+gpp++ iTgv++p+s+ + le +g+rLa +Ae++gvpfef+ +a +++ 678464754 248 KFAYVSSSVIINEAMENESSIHIIDFQIAQGSQWISFIQSVSLRPGGPPTVHITGVDDPQSTyaRGGGLEIVGQRLAIVAEKCGVPFEFHN-AAICGTEV 346 ************************************************************9999999************************.8999**** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +le+L++++gEalaVn+ + lh+++de v++e++rd++L+lvk+l+Pk+v+++eqe+++n+++F+ rf+e+l+yy+a+f+s++a +re++ ri+ E+++ 678464754 347 QLENLHIRNGEALAVNFPYVLHHMPDEGVTTENHRDRLLRLVKHLRPKIVTIIEQESNTNTSPFVPRFCETLDYYTAMFESIDARRSREDRVRISTEEHC 446 **************************************************************************************************** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++vn++aceg er+erhe ++kWr+rl++a F++v+ls+ + ++ llr ++ y+v ee+g l+lgWk+r++ ++SaWr 678464754 447 VAKDVVNIIACEGVEREERHELFGKWRSRLGMAQFSQVRLSSAVSYAVRDLLRAYS-PHYKVWEENGGLYLGWKNRAMSTCSAWR 530 *******************************************************9.55*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.66 | 121 | 511 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-112 | 148 | 530 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MLMSQDTEPP SSFPSFCSQP MPSRTQSYGF SNAATTRSGS QGSGVSYAEH YPTLESVHEI 60 SVFTHSSPSI GSNTSSWSPF SPHGSHYSLV SEDQLSFYNA VPDSGWLVGS TIEDEFNMMQ 120 SLQGPDSDSD ESPRYSRVLE MAQEKDLKEL LITCAEVVGE ADSISSSRRQ SWSAVVEELM 180 KLIEERVSVS GDPLQRLGAY MLEGIRAKLL QTGFILYKKL RCNQPVNPSS SELMSYMHVI 240 YEICPYFKFA YVSSSVIINE AMENESSIHI IDFQIAQGSQ WISFIQSVSL RPGGPPTVHI 300 TGVDDPQSTY ARGGGLEIVG QRLAIVAEKC GVPFEFHNAA ICGTEVQLEN LHIRNGEALA 360 VNFPYVLHHM PDEGVTTENH RDRLLRLVKH LRPKIVTIIE QESNTNTSPF VPRFCETLDY 420 YTAMFESIDA RRSREDRVRI STEEHCVAKD VVNIIACEGV EREERHELFG KWRSRLGMAQ 480 FSQVRLSSAV SYAVRDLLRA YSPHYKVWEE NGGLYLGWKN RAMSTCSAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-52 | 176 | 529 | 35 | 378 | Protein SCARECROW |
5b3h_A | 6e-52 | 176 | 529 | 34 | 377 | Protein SCARECROW |
5b3h_D | 6e-52 | 176 | 529 | 34 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678464754 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095941.1 | 0.0 | scarecrow-like protein 13 | ||||
Swissprot | Q8H125 | 1e-169 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A022QK74 | 0.0 | A0A022QK74_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M01421.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 1e-172 | scarecrow-like 5 |
Publications ? help Back to Top | |||
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