PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678464679
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 214aa    MW: 24924.6 Da    PI: 9.2927
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678464679genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll ++++++G g W++++++ g+ R++k+c++rw++yl
        678464679 10 KGAWTREEDALLRKCIQMYGEGKWHLVPHRAGLSRCRKSCRLRWLNYL 57
                     79********************************************97 PP
2Myb_DNA-binding49.59.5e-1663107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  +T++E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++
        678464679  63 RSCFTEDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNSH 107
                      6789******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.181561IPR017930Myb domain
SuperFamilySSF466894.03E-287104IPR009057Homeodomain-like
SMARTSM007176.6E-15959IPR001005SANT/Myb domain
PfamPF002491.2E-151057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-211164IPR009057Homeodomain-like
CDDcd001671.47E-101257No hitNo description
SMARTSM007172.8E-1462110IPR001005SANT/Myb domain
PROSITE profilePS5129418.71662112IPR017930Myb domain
PfamPF002492.4E-1463107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-2365112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAQEVRGLRK GAWTREEDAL LRKCIQMYGE GKWHLVPHRA GLSRCRKSCR LRWLNYLRPD  60
INRSCFTEDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV KNFWNSHVQK KMSTGGVFKM  120
SAARKQKPIV IRPRPLRLSR REEPPKENPT EKEAKILATP PREEEDPECF NWWSKLLEMA  180
ENGDGDQLHG YTETPADMST EMDLGFFSSM FEDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2681145110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678464679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099468.14e-70transcription factor MYB1
SwissprotQ9FNV94e-58MY113_ARATH; Transcription factor MYB113
TrEMBLA0A060IF026e-66A0A060IF02_ERYLE; Anthocyanin-activating R2R3 MYB transcription factor
TrEMBLQ2VAZ74e-66Q2VAZ7_ANTMA; ROSEA1
STRINGXP_009605381.14e-65(Nicotiana tomentosiformis)
STRINGXP_009627993.14e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.11e-53myb domain protein 114
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]