PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678464620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 23546.2 Da PI: 9.0415 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.5 | 1.2e-16 | 77 | 125 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 + GVr++k +g+++AeIrdp + kr++lg+f taeeAa+a++a ++ +e 678464620 77 FVGVRRRK-WGKFAAEIRDPLR---KgKRVWLGTFATAEEAAEAYVAKKLDIE 125 78***998.**********732...24*******************9987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.6E-15 | 76 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-21 | 76 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.241 | 76 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 77 | 128 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-11 | 77 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 77 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDDLKLKFYS ATRIRVSYSD PYATDSSSDE SETNSKRKVH EIVLRRAPAR VARKKGESGD 60 FRDLKDLRWR EEGNRSFVGV RRRKWGKFAA EIRDPLRKGK RVWLGTFATA EEAAEAYVAK 120 KLDIEEKLRA KNCSDMNQKS PSSVFETESW ESSHDSGCRS DKVSEDKDGD VVNGNGLFMM 180 GDFSRLNDLS IIAAAEYEAI SNSRSRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-13 | 74 | 117 | 3 | 46 | ATERF1 |
3gcc_A | 1e-13 | 74 | 117 | 3 | 46 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678464620 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070807.1 | 4e-44 | ethylene-responsive transcription factor ERF069 | ||||
TrEMBL | A0A2G9GIW9 | 5e-41 | A0A2G9GIW9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00336.1.p | 3e-33 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5075 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61590.1 | 6e-13 | ERF family protein |