PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678464521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 22731.1 Da PI: 10.3554 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.7 | 2.6e-35 | 9 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCa+Ck++rr+C+++C lapyfp+++p++f nvh+lFG++nv+++l++l ++ e++da+ s++yeAe+r r P+ G++ ++++l++ql+++ +l+ +++ 678464521 9 ACASCKFQRRRCSPSCQLAPYFPSDKPQTFLNVHRLFGVANVTNTLNNLkSKCEKDDAIVSMIYEAEMRRRFPMFGCTIILHRLEWQLAEATRKLQWVQA 108 7************************************************66677******************************************9998 PP DUF260 100 el 101 +l 678464521 109 QL 110 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.413 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-34 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MANGGAVPAC ASCKFQRRRC SPSCQLAPYF PSDKPQTFLN VHRLFGVANV TNTLNNLKSK 60 CEKDDAIVSM IYEAEMRRRF PMFGCTIILH RLEWQLAEAT RKLQWVQAQL EMRKKKMINK 120 KAKMAGPRWD HCEIPRLQPI SELTDQKNTD DGGQSSESST HIPTRVPLQR EKGQAFSPRS 180 SPPRWWSPEQ PPGGADHRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-26 | 5 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-26 | 5 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678464521 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022843049.1 | 3e-40 | LOB domain-containing protein 27-like | ||||
Refseq | XP_022886739.1 | 3e-40 | LOB domain-containing protein 1-like | ||||
TrEMBL | A0A2G9GDN9 | 4e-40 | A0A2G9GDN9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.K01341.1.p | 5e-37 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 6e-28 | LBD family protein |