PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678463723 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22210.2 Da PI: 5.0202 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90 | 1.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRr+g+lKKA+ELS+LC+a+v vii+sstgkly ++s 678463723 9 KRIEDKSARQVTFSKRRAGLLKKAHELSILCAADVGVIIYSSTGKLYQFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 29.5 | 3.1e-11 | 120 | 167 | 47 | 94 |
K-box 47 slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 sl +L Le+qLe++l +i++ K++lll+ i+ + kek+l ee L 678463723 120 SLVDLVVLENQLETALLQIKTAKTHLLLNTISAMEDKEKALTEEMILL 167 5789*************************************9987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.436 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-29 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.30E-37 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.195 | 84 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.2E-7 | 117 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGRRRLELKR IEDKSARQVT FSKRRAGLLK KAHELSILCA ADVGVIIYSS TGKLYQFCSG 60 NSLSRTLWRY YNYVGSEASP ANGERKEKAD YSKYSEYITS EELLQMVESQ LSEPCDDHDS 120 LVDLVVLENQ LETALLQIKT AKTHLLLNTI SAMEDKEKAL TEEMILLEGK KNVQKNVNVK 180 EATLDLNMAP DDENDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-19 | 1 | 84 | 1 | 83 | MEF2C |
5f28_B | 4e-19 | 1 | 84 | 1 | 83 | MEF2C |
5f28_C | 4e-19 | 1 | 84 | 1 | 83 | MEF2C |
5f28_D | 4e-19 | 1 | 84 | 1 | 83 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678463723 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071241.1 | 2e-57 | agamous-like MADS-box protein AGL27 isoform X4 | ||||
TrEMBL | B2DCP7 | 8e-62 | B2DCP7_9LAMI; RIN-like MADS-box protein | ||||
STRING | XP_009595701.1 | 1e-55 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65060.1 | 6e-36 | MIKC_MADS family protein |