PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678463650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 198aa MW: 22885.5 Da PI: 10.4466 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 78.4 | 1.3e-24 | 91 | 192 | 222 | 323 |
GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 +++ L+l++++ P+++++ + +n++ F++rf eal ys+lfd+++a++ re+e+r +E++l+++++ +++ ceg++r+e +t+++W+ ++ 678463650 91 RLQNAALRLIRKIDPDIFIFRVVNGTYNTPHFVARFREALFQYSSLFDMFDATMCREHENRLLLEAQLFRKKALSIIVCEGSQRVEHPKTYKQWQVGNRK 190 345699****************************************************************************************987766 PP GRAS 322 aG 323 aG 678463650 191 AG 192 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.707 | 1 | 198 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-22 | 91 | 192 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAFNGLVSSV LYPHGLMDLG NFMSQGLISC NHDSDQLLGW LWPTLGTVRD SVFPLSTVQQ 60 NRNGKPLFYR LSESKISRLK RVNCSLNSLY RLQNAALRLI RKIDPDIFIF RVVNGTYNTP 120 HFVARFREAL FQYSSLFDMF DATMCREHEN RLLLEAQLFR KKALSIIVCE GSQRVEHPKT 180 YKQWQVGNRK AGNILGRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678463650 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089500.1 | 4e-39 | scarecrow-like protein 30 | ||||
Swissprot | O80933 | 8e-32 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1S4BI92 | 7e-36 | A0A1S4BI92_TOBAC; scarecrow-like protein 14 | ||||
STRING | GLYMA11G14670.1 | 3e-36 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 3e-34 | GRAS family protein |