PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678463625

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WOX

Protein Properties

Length: 297aa MW: 33032.1 Da PI: 5.2036

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678463625	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.7	2.6e-20	119	179	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F + +ps+++++e++ +l +++e++V++WFqNrRa+ k+ 678463625 119 RQRWTPTAMQLQILERMFDQgIGTPSKQKIKEITGELsqhgQISETNVYNWFQNRRARSKR 179 89***************99************************************97 PP
2	Wus_type_Homeobox	101.5	6.1e-33	119	181	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPt+ Q++iLe+++++G+ tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq 678463625 119 RQRWTPTAMQLQILERMFDQGIGTPSKQKIKEITGELSQHGQISETNVYNWFQNRRARSKRKQ 181 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-16	112	186	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.268	115	180	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	117	182	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-13	117	184	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-18	119	179	IPR001356	Homeobox domain
CDD	cd00086	3.64E-13	119	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDDVGEENIR VPDRCHYFAE SLGISLALLS SPGSMEWQKQ PPPPPQQPED PGGGVFVKVM 60 TDEQMEVLRK QIAVYAAICE QLVELHKSLT SHNDLAGMRL GNMYCDTLIA SGTHKITGRQ 120 RWTPTAMQLQ ILERMFDQGI GTPSKQKIKE ITGELSQHGQ ISETNVYNWF QNRRARSKRK 180 QQSTPSNKEE SEVDTEVESP TEKKAKPPEF QAHHALTSSA GDLCFQDHSF HSVDTLNGKI 240 DSIMSPEGSS KFGDILGQMP FYGSTLSGSS AGIDQIMGKM EVQGNYNYLL QDGYSMD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	180	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678463625

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099896.1	1e-125	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	5e-80	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A4D8YII2	1e-123	A0A4D8YII2_SALSN; Uncharacterized protein
STRING	Migut.H02206.1.p	1e-104	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-69	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]