PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678463446 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28636.1 Da PI: 6.3681 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 104 | 152 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g 678463446 104 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 152 8******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.31E-33 | 102 | 162 | No hit | No description |
SMART | SM00380 | 4.3E-37 | 103 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-23 | 103 | 161 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-32 | 103 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.748 | 103 | 160 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-14 | 104 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAAALGLYGS SGSSQGFYCD PFREELMQAL EPFMKNCAAS GPISSSPLEE TQVFSNPHSE 60 IYHETGYQFQ LQEQQLQMRY NQNLTCLAPK PAAMKATQKG VKLFRGVRQR HWGKWVAEIR 120 LPRNRTRLWL GTFDTAEEAA LAYDKAAYKL RGDFARLNFP HLKHHLSQSH PLSSSVDAKL 180 QAICESLAES EKHDTQNHHL IHETVKLEEP SSSSPSDEGS EVSFLDFSNC SSFEDLMMDK 240 CHSMEINWAY SQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 102 | 160 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678463446 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090520.1 | 2e-67 | ethylene-responsive transcription factor ERF060 | ||||
Swissprot | O65665 | 5e-60 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A4D9AKF5 | 1e-67 | A0A4D9AKF5_SALSN; EREBP-like factor | ||||
STRING | cassava4.1_010367m | 6e-63 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 1e-38 | ERF family protein |