PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678463176
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 323aa    MW: 35690.3 Da    PI: 8.0214
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678463176genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.4e-33149207159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vk+s+fprsYYrCts+ C vkk+ver++ dp++v++tYeg+H+h+
  678463176 149 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSTACGVKKRVERASADPSIVVTTYEGTHKHP 207
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-34134209IPR003657WRKY domain
SuperFamilySSF1182901.44E-28141209IPR003657WRKY domain
PROSITE profilePS5081131.766144209IPR003657WRKY domain
SMARTSM007744.5E-38149208IPR003657WRKY domain
PfamPF031069.7E-27150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEENSRKSYC WEKGGGGDGG FVGEECTSSL GFVDMLLSRH RRSHSGFSFR IFDDDEDLPL  60
LPPATAVAPA DKSELVNARN SPPTPNSSSI STEAPPPLPS TAYNRGDQPA RHGELKMGEN  120
AADMKKTKKR KREREPRFAF MTKTEIDHLD DGYRWRKYGQ KAVKNSPFPR SYYRCTSTAC  180
GVKKRVERAS ADPSIVVTTY EGTHKHPCPV TLSTTFGIPS DIPVAVGDIL PFDLLFHSSP  240
DPLHHRPVFS TNVVPVPPPL SSCATNTTST CPVLPSFPLT RDKKPFFCSS PSSSFRDHGL  300
LQDMLPPQIL LLQDDSKDKL ELV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28139210778Probable WRKY transcription factor 4
2lex_A2e-28139210778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678463176
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FGZ44e-42WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A2G9I0G12e-59A0A2G9I0G1_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-42WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]