PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678463089

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 574aa MW: 63177.6 Da PI: 7.1805

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678463089	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	269.4	1.2e-82	221	574	6	374
GRAS 6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105 +++A a+s+g+l +a ++ +rl + +p + la y++ A + r + + ++++++e ++++++ vsP++k+++++aN aIlea 678463089 221 IDAAVAISEGKLDAAAEIFSRLLQ------EPKRSLAGYMVSAFKFRGS------------FNFPSMTMEEYSVSTQMLYCVSPCFKLGFMAANLAILEA 302 555666666666666666655544......3445556666666555543............3444455788888999*********************** PP GRAS 106 vege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 ++ e +++H++Df+++qG+Q++ Ll+aLa+ + g+ sl iT++ + + +e+l+++ge L+ + +++g+++ f++ ++ +++ e+L+++++Ea 678463089 303 ASVEnlcfQKIHVLDFELGQGGQYVHLLHALAAAETGSKSLVITAFTY-TGVGEEKLKAVGEGLKAVSQKVGISLVFHA-RDFNIGAISREKLEINSDEA 400 99989999************************************.5569*********************9.677************* PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 l Vn++++lh+l+desvs+e+ rd +L+ vk+lsP vv+vveqe+++n++++ +r+ +a +yy+al++sl++++++es +r + + +gr+i n va e 678463089 401 LTVNFAFKLHKLPDESVSVENIRDGLLRRVKTLSPAVVTVVEQELNTNTAPLTTRVRDAYDYYAALMESLDSTISPESPDRERILDA-IGRRIYNSVASE 499 *****************************************************************************999999.9******* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 g+er+er+e ++kWr+r+++aGF+p+ l+ +aa++ ++ l++ + g++v e+ g + +gW++++L+++SaWr 678463089 500 GRERVERCEVFGKWRSRMSMAGFQPLVLNPRAANSLRAKLNTGTrvNPGFTVGEDAGGISFGWRGKTLTVASAWR 574 ********************************999987665789************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.072	183	552	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-80	221	574	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MSSGGPPDFY SSATRSAAAS SLLPTVASPV YNPFLAQEHH HLPLQSPMMG QDSRAQIRLP 60 EFLGRRSLLD IQQNPQAVGF YLRNAKKMRP HYEISPQTLS QHTPLPPEFS NPRYGIPILR 120 QQRPHDFTSS NANLNGQFTS TEETQKSLMN HRLQELEKEL LKDEEEDESV SVVTNTELSV 180 AIRNLIDPAQ NTISPSPTSP SSSSSSASVT QPYPCHKQAV IDAAVAISEG KLDAAAEIFS 240 RLLQEPKRSL AGYMVSAFKF RGSFNFPSMT MEEYSVSTQM LYCVSPCFKL GFMAANLAIL 300 EAASVENLCF QKIHVLDFEL GQGGQYVHLL HALAAAETGS KSLVITAFTY TGVGEEKLKA 360 VGEGLKAVSQ KVGISLVFHA RDFNIGAISR EKLEINSDEA LTVNFAFKLH KLPDESVSVE 420 NIRDGLLRRV KTLSPAVVTV VEQELNTNTA PLTTRVRDAY DYYAALMESL DSTISPESPD 480 RERILDAIGR RIYNSVASEG RERVERCEVF GKWRSRMSMA GFQPLVLNPR AANSLRAKLN 540 TGTRVNPGFT VGEDAGGISF GWRGKTLTVA SAWR

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MSSGGPPDFY SSATRSAAAS SLLPTVASPV YNPFLAQEHH HLPLQSPMMG QDSRAQIRLP  60
EFLGRRSLLD IQQNPQAVGF YLRNAKKMRP HYEISPQTLS QHTPLPPEFS NPRYGIPILR  120
QQRPHDFTSS NANLNGQFTS TEETQKSLMN HRLQELEKEL LKDEEEDESV SVVTNTELSV  180
AIRNLIDPAQ NTISPSPTSP SSSSSSASVT QPYPCHKQAV IDAAVAISEG KLDAAAEIFS  240
RLLQEPKRSL AGYMVSAFKF RGSFNFPSMT MEEYSVSTQM LYCVSPCFKL GFMAANLAIL  300
EAASVENLCF QKIHVLDFEL GQGGQYVHLL HALAAAETGS KSLVITAFTY TGVGEEKLKA  360
VGEGLKAVSQ KVGISLVFHA RDFNIGAISR EKLEINSDEA LTVNFAFKLH KLPDESVSVE  420
NIRDGLLRRV KTLSPAVVTV VEQELNTNTA PLTTRVRDAY DYYAALMESL DSTISPESPD  480
RERILDAIGR RIYNSVASEG RERVERCEVF GKWRSRMSMA GFQPLVLNPR AANSLRAKLN  540
TGTRVNPGFT VGEDAGGISF GWRGKTLTVA SAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-30	215	574	11	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678463089

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076123.1	0.0	scarecrow-like protein 8
TrEMBL	S8EMR1	0.0	S8EMR1_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.F01094.1.p	1e-176	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4023	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-111	SCARECROW-like 8