PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678462996
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 333aa    MW: 37305.9 Da    PI: 7.8546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678462996genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.5e-09110156246
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                      g+WT eE +++ +a + + ++   +W+ +a++++ g+t  ++++ ++ 
        678462996 110 GKWTREENKIFERALAFFDKDtpdRWHNVASMIP-GKTVQDVIDQYRE 156
                      89********************************.*********9986 PP
2Myb_DNA-binding475.7e-15209253347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
        678462996 209 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 253
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-6105158IPR009057Homeodomain-like
PROSITE profilePS512938.587107162IPR017884SANT domain
SMARTSM007173.5E-11108160IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-12110165IPR009057Homeodomain-like
PfamPF002492.8E-7110157IPR001005SANT/Myb domain
CDDcd001676.54E-8111158No hitNo description
PROSITE profilePS5129421.066202258IPR017930Myb domain
SuperFamilySSF466891.57E-17204258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17205257IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.9E-13206252IPR009057Homeodomain-like
SMARTSM007172.1E-13206256IPR001005SANT/Myb domain
CDDcd001676.69E-11209254No hitNo description
PfamPF002492.2E-12209253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGISSATEGF IRIPTTPEAE MGTMELAVSF FRAGNTDFWL TVEIESQSLA SLPQTGCFLL  60
SVAHQDLIFS SAVGSPLFLF SIVVHLSQKL MNRDLGPAPR SLFQEKYKSG KWTREENKIF  120
ERALAFFDKD TPDRWHNVAS MIPGKTVQDV IDQYRELVED ITDIEAGRIP VPGYINNTFT  180
LEWENRALSP SPSSSRSSSV DHERKKGVPW TEEEHRQFLM GLKKYGKGDW RNISRNFVTT  240
RTPTQVASHA QKYFIRQHSV GKDKRRSSIH DITTVSIEES TSSPSPEEES SRKAAAASKN  300
TGSMVSHAEQ SQGNGSVFGV NLQETRTQLK LSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-191121741173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678462996
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094978.12e-97transcription factor DIVARICATA-like
SwissprotQ8S9H78e-75DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G9I5K71e-94A0A2G9I5K7_9LAMI; Zuotin
STRINGSolyc09g014250.2.16e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-84MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]