PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678462426
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 193aa    MW: 20891.5 Da    PI: 6.6757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678462426genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.97e-154188355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++G+r +  +g+Wv+eIr+p++   ++r++lg++ ++e+Aa+a++ a+++l+g
  678462426 41 FSGIRLR--SGKWVSEIREPKK---TTRIWLGTYTSPEMAAAAYDVAALALKG 88
               7899875..5*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.2022496IPR001471AP2/ERF domain
SMARTSM003806.6E-2440104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-244097IPR001471AP2/ERF domain
PfamPF008474.2E-84188IPR001471AP2/ERF domain
CDDcd000181.68E-144197No hitNo description
SuperFamilySSF541711.44E-164397IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAERRDRSIS MAPEHHTPPS ELPSPKKVKK SHSTPSRHPT FSGIRLRSGK WVSEIREPKK  60
TTRIWLGTYT SPEMAAAAYD VAALALKGGD ASLNFPDRAS LYPVPDSNSA ADIRQAAASA  120
ARMIDCGQGS GKVEPCLTPE ASRSECGFVD EEELLNMHNL LVDMAGGLLV SPPRLETRSS  180
PENSDGGESL WSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678462426
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081410.12e-55PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ908e-45ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A4D8YZ521e-54A0A4D8YZ52_SALSN; EREBP-like factor
STRINGVIT_16s0100g00400.t011e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-37ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]