PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678462370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 168aa MW: 19669.1 Da PI: 8.0699 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.5e-07 | 7 | 50 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT Ed+ + ++ ++ g +W++Ia+++ ++++ ++ ++ 678462370 7 NWTWNEDKVFENCLLEFEEGcpnRWESIAERLR-TKSPAEVERHY 50 8********************************.**********9 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.2e-16 | 100 | 145 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ +++++ +++G+g+Wk+I+r+ ++R + q+ s+ qk+ 678462370 100 KPWTEEEHRRFLQGLEKYGKGDWKSISRYAVQTRNPTQVASHAQKH 145 58******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.12 | 3 | 58 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-4 | 4 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.9E-10 | 6 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.2E-6 | 7 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.09E-4 | 7 | 54 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-5 | 8 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.07 | 94 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.76E-17 | 95 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 95 | 153 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-15 | 98 | 149 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-11 | 98 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-13 | 100 | 145 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.93E-10 | 101 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MEPGEPNWTW NEDKVFENCL LEFEEGCPNR WESIAERLRT KSPAEVERHY AALLSDVTAI 60 DAGLIDLPKY QEREVPVPQA RQKNPKSDKK PAVVQRKVGK PWTEEEHRRF LQGLEKYGKG 120 DWKSISRYAV QTRNPTQVAS HAQKHFERQE KEEANKKRRS IFDCPIPE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678462370 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095585.1 | 9e-81 | transcription factor DIVARICATA-like | ||||
TrEMBL | S8DRM7 | 3e-79 | S8DRM7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.M01627.1.p | 1e-70 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14988 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-47 | MYB family protein |