PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678462241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 20654.1 Da PI: 9.68 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.4e-20 | 104 | 152 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa+a+++a+ k++g 678462241 104 YRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEDAARAYDRAAIKFRG 152 9*******.**********94....36*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.01E-23 | 103 | 160 | No hit | No description |
SMART | SM00380 | 4.4E-40 | 103 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-23 | 103 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-14 | 103 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-33 | 103 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.488 | 103 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MQTKKRSADA TSPEELADVA SRRLTAEDET AAMVTALKRV ISGTESSPVS EDLPPGERKP 60 GGEGALTLTE DMETCLACGI KGCLGCSYFE EGVTGDRKRK KRNYRGVRQR PWGKWAAEIR 120 DPRKAARVWL GTFETAEDAA RAYDRAAIKF RGPRAKLNFP FTEYAAGENS STAGTGALNR 180 NYGRPGSSSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-26 | 100 | 161 | 2 | 64 | ATERF1 |
3gcc_A | 3e-26 | 100 | 161 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 100 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678462241 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088263.1 | 3e-51 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 3e-33 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2G9GYP8 | 1e-59 | A0A2G9GYP8_9LAMI; Uncharacterized protein | ||||
STRING | XP_008454945.1 | 2e-49 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-33 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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