PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678462029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 303aa MW: 34049.1 Da PI: 9.7479 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.8 | 3.4e-29 | 110 | 160 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtf+kRr+g+lKKA+ELSvLC+aev++i+fss+gklyey+s 678462029 110 KRIENATSRQVTFCKRRTGLLKKAYELSVLCEAEVSLIVFSSKGKLYEYAS 160 79***********************************************86 PP | |||||||
2 | K-box | 47.8 | 6.1e-17 | 185 | 252 | 9 | 77 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 eeak++ + qe++kL+++i+ +q e+R+llG ++s slkeL+++e ++ek++ kiRsk+ + + i 678462029 185 SEEAKTQFYLQEASKLRNQIRDIQFENRKLLGR-VGSRSLKELKSMEAKIEKAIAKIRSKRVSVEANLI 252 7899********************999*****6.8*************************988766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.057 | 102 | 162 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-39 | 102 | 161 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-32 | 103 | 176 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.62E-42 | 103 | 179 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 104 | 158 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-31 | 104 | 124 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 111 | 158 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-31 | 124 | 139 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-31 | 139 | 160 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.9E-12 | 184 | 247 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.076 | 190 | 289 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MSCSLEKGDE WGAAFLVKFV AINEPSNRRV MDDSIISTHS RFSSRYCCIA LPSCLHDGAW 60 LRFFVLIILI ISSPVNVVLF VQLPSMAPRN QEAESSNCHR RNGRGKVEIK RIENATSRQV 120 TFCKRRTGLL KKAYELSVLC EAEVSLIVFS SKGKLYEYAS SSVRETIERY KKAASGSTSS 180 VVITSEEAKT QFYLQEASKL RNQIRDIQFE NRKLLGRVGS RSLKELKSME AKIEKAIAKI 240 RSKRVSVEAN LIAGAQHDLE GIRSFISMNN MEPNRDYSRH GQLPVQLLYD VPSLAYPGNA 300 DDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 4e-19 | 103 | 170 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 4e-19 | 103 | 170 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 4e-19 | 103 | 170 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 4e-19 | 103 | 170 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3kov_B | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3kov_I | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3kov_J | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_A | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_B | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_C | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_D | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_I | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_J | 5e-19 | 103 | 170 | 1 | 68 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678462029 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082936.1 | 2e-76 | floral homeotic protein AGAMOUS | ||||
Swissprot | Q93XH4 | 4e-61 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A2G9HUZ9 | 8e-73 | A0A2G9HUZ9_9LAMI; MADS box transcription factor | ||||
STRING | XP_009762632.1 | 3e-62 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42830.1 | 6e-62 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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