PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678462014
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 382aa    MW: 42968.5 Da    PI: 5.5063
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678462014genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.71.3e-31341215101
                   HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   ++ye+++d+ ++ ++sws++g sfvv+++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF++++F kgk++ll++i r+k
     678462014  34 RTYEMVDDPLTSCIVSWSDTGCSFVVWNSPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPER---------WEFANRYFIKGKTDLLTNICRRK 121
                   79************************************************************999.........*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000561.0E-163154IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004152.7E-4733120IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-2834120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-2934120IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3334120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-166981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-168294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSAAMTGLGF AGLEAKIEEL RIPVDARHLF EESRTYEMVD DPLTSCIVSW SDTGCSFVVW  60
NSPEFCRDLL PKYFKHNNFS SFVRQLNTYG FRKVDPERWE FANRYFIKGK TDLLTNICRR  120
KPVHDHFGSR GNSVVVTVSE REELEEEIGR LKQEKRSLES AVEKYKYENE RYRNQIRLLG  180
QMLINVGGEQ PLMMASLTKF LEKPWYVEQP QGLKGKRRML AYNEVNPGLS PSLMLQDNTS  240
FSSGPSCIIQ AVEKLDSSLT PWESFGHGIN HTPSQIVKDL TSASAASYEE LATEMAALSA  300
DSNSNVSQGT FLNIAASSRH ADSPRISSKF GDPGHKLCEV SVKEMKDGED GRSIPPLPAG  360
TNDVFWEQFL IEAPVSSITQ EV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-213312031129Heat shock factor protein 1
5d5v_B6e-213312031129Heat shock factor protein 1
5d5v_D6e-213312031129Heat shock factor protein 1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678462014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554487.11e-102heat stress transcription factor A-4b
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.28e-48heat shock factor 3