PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461942
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 178aa    MW: 20324.7 Da    PI: 10.3049
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461942genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.1e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri+n s rqvtfskRr+g++KKA+ELSvLCda+va+iifsstgkl+++ss
  678461942  9 KRIDNLSARQVTFSKRRKGLIKKASELSVLCDAQVALIIFSSTGKLFDFSS 59
               79***********************************************96 PP
2K-box30.61.4e-111001702797
      K-box  27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                e+ +  r++R+l  edL  Ls+++L+++e+ L  +l++i skKn+ + + +eelq+k  +l + n+ L+++
  678461942 100 EVMERTRQLRRLRVEDLLGLSVEDLHSMEKSLGAGLNRIISKKNQKIEQRTEELQEKILQLTKGNELLKQE 170
                444445889**********************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.941161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-31173IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002652.27E-38276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-27323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.66887178IPR002487Transcription factor, K-box
PfamPF014861.1E-1196170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAREKIKIKR IDNLSARQVT FSKRRKGLIK KASELSVLCD AQVALIIFSS TGKLFDFSSS  60
SMDEILKRYH LHCKNSNNPA QPLLDLEVVV GSHTPTLTKE VMERTRQLRR LRVEDLLGLS  120
VEDLHSMEKS LGAGLNRIIS KKNQKIEQRT EELQEKILQL TKGNELLKQE ESQLRLCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22189185MEF2C
5f28_B3e-22189185MEF2C
5f28_C3e-22189185MEF2C
5f28_D3e-22189185MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963363.12e-63MADS-box protein JOINTLESS
RefseqXP_015963364.12e-63MADS-box protein JOINTLESS
SwissprotQ9FUY62e-58JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2G9G7L14e-65A0A2G9G7L1_9LAMI; MADS box transcription factor
STRINGLus100257191e-63(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-59MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]