PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678461739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 30541 Da PI: 4.6133 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.4e-19 | 122 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp ++ +r +lg+f++ae Aa a++ a+++++g 678461739 122 KYRGVRQRP-WGKWAAEIRDP----IKaARLWLGTFDSAEAAAMAYDMAALRFRG 171 8********.**********7....357*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-32 | 121 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-13 | 122 | 171 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.264 | 122 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.22E-21 | 122 | 181 | No hit | No description |
SMART | SM00380 | 5.7E-37 | 122 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 122 | 180 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.3E-14 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-14 | 161 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MTLYMRDFKV EDTPQEAFQF HPWGGEMGME MEMEMDTETA QNQFFHGGNG NYGMLPGYAR 60 ELEMPAMVST PTNFVPGNSD GGVAGGGGVC VQSESVVTIV KEPAVYTYST SVTLNRDSSP 120 RKYRGVRQRP WGKWAAEIRD PIKAARLWLG TFDSAEAAAM AYDMAALRFR GNKAKLNFPE 180 NVKLASRESS NAPPKDERRS SNSSPPTAHT QPQIQGNNSD YDNQYNAWSM LDEPMMFYPS 240 VADYPTASLQ PDIIAELWPE MGGYSSGGPE FHWTP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 121 | 182 | 4 | 66 | ATERF1 |
3gcc_A | 2e-22 | 121 | 182 | 4 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678461739 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159794.1 | 7e-43 | hypothetical protein PHAVU_002G267800g | ||||
TrEMBL | V7CR13 | 2e-41 | V7CR13_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159794.1 | 3e-42 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 1e-26 | related to AP2 6 |