PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461538
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 723aa    MW: 79080.4 Da    PI: 6.0953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461538genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1957112156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++e+e++F+++++p+ ++r++L ++lgL+  q+k+WFqN+R+++k
  678461538  57 KKRYHRHTQHQIQEMEAFFNECPHPDDKQRKDLGRRLGLEPLQIKFWFQNKRTQMK 112
                688999***********************************************998 PP
2START203.96.7e-642454651206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela +a++el+++a+++ep+W   +    e +  de++q+f+++        ++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a+t+ev+s+
  678461538 245 ELAVAAMEELIRMAQSGEPLWIPGPdglsETLSDDEYIQSFSRGLMpkplgMKSEASRESAVVIMNHMNLVEILMDVN-QWSSIFSsiisRAATIEVLST 343
                57899******************99999999**********88777********************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      ga q+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ q+      v R +++pSg+li++++ng skvtwveh+++++r +h++
  678461538 344 GvagnynGAFQVMTAEFQVPSPLVPtRENYFVRYCKQHPDGTWAVVDVSLDNLQSTA----VPRYRRRPSGCLIQELPNGCSKVTWVEHAEVDDRAVHSI 439
                *******************************************************87....567777********************************* PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                ++ lv+sgla+gak+wvatl+rqc++
  678461538 440 YKLLVNSGLAFGAKRWVATLRRQCAR 465
                ************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2137112IPR009057Homeodomain-like
SuperFamilySSF466897.52E-1846114IPR009057Homeodomain-like
PROSITE profilePS5007116.03454114IPR001356Homeobox domain
SMARTSM003896.1E-1855118IPR001356Homeobox domain
PfamPF000465.4E-1757112IPR001356Homeobox domain
CDDcd000861.75E-1757115No hitNo description
PROSITE profilePS5084845.088236468IPR002913START domain
SuperFamilySSF559613.5E-37236467No hitNo description
CDDcd088751.63E-118240464No hitNo description
SMARTSM002344.7E-61245465IPR002913START domain
PfamPF018522.6E-53246465IPR002913START domain
Gene3DG3DSA:3.30.530.206.6E-7337466IPR023393START-like domain
SuperFamilySSF559612.47E-25484715No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MFQPSIFDSL SSHKQLHKAP ENDLDLITGD DEYESKSGTD IMDGEDGKDP NHRPSKKKRY  60
HRHTQHQIQE MEAFFNECPH PDDKQRKDLG RRLGLEPLQI KFWFQNKRTQ MKAQHERHEN  120
SQLRMENEKL LAENMRYKDA LTNAACPNCG GPANIGEMSF DEQHLRIENG HLREEIDRIS  180
GIAAKCVGKP MLSYPHLPAG ANASLDFGVG NFRQQTGLTA ERYGAADLLR SVSGQTEADK  240
TMMIELAVAA MEELIRMAQS GEPLWIPGPD GLSETLSDDE YIQSFSRGLM PKPLGMKSEA  300
SRESAVVIMN HMNLVEILMD VNQWSSIFSS IISRAATIEV LSTGVAGNYN GAFQVMTAEF  360
QVPSPLVPTR ENYFVRYCKQ HPDGTWAVVD VSLDNLQSTA VPRYRRRPSG CLIQELPNGC  420
SKVTWVEHAE VDDRAVHSIY KLLVNSGLAF GAKRWVATLR RQCARLASFM ENNHPAGGGV  480
VTSPEGRKSM LKLAERMVMS FCNGVGASTA HTWTTLSGSG ADDVRVMTRK SIDDPGRPPG  540
IVLSAATSFW LPVPPNRVFH FLKDENSRSE WDILSNGGLV QQIAHISNGG DPSNAVSLLR  600
VNSTNSSQSN MLILQESSTD STGSYVIYAP VDIDAMNMVL GGGDPDYVAL LPSGFAILPD  660
GPNGPAGGNP DVGSGSSLLT VAFQILVDSV PSAKLSLGSI ATVNNLIKCT VERIKGAVLC  720
EGA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A2G9GCJ20.0A0A2G9GCJ2_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]