PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678461517

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

MYB

Protein Properties

Length: 240aa MW: 27428.7 Da PI: 5.138

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678461517	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ G +W++ ++ g++R++k+c++rw +yl 678461517 14 KGPWTAEEDQKLINFMLINGQCCWRALPQLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	57.7	2.7e-18	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++eE++l +d +++lG++ W++Ia++m+ gRt++++k++w+++ 678461517 70 LSPEEEQLVIDMHARLGNR-WSKIASCMP-GRTDNEIKNHWNTH 111 59***************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-20	5	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.846	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.69E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.07E-8	16	61	No hit	No description
PROSITE profile	PS51294	25.373	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-25	63	116	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-15	71	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.89E-13	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MGRQPCCDKA GVKKGPWTAE EDQKLINFML INGQCCWRAL PQLAGLRRCG KSCRLRWTNY 60 LRPDLKRGIL SPEEEQLVID MHARLGNRWS KIASCMPGRT DNEIKNHWNT HIKKKLLKMG 120 IDPVTHQPLQ NRNQNQNQNQ NTISHEDEQS FSTSDQNLSS KESNSSDTHL YADSDLINYL 180 FSDDDPLDQL GDAQDLNAFF SMSCDENLSW LLPCEDFGIH DFGFESSYGS SPIETMETLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-29	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678461517

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081193.1	1e-102	protein ODORANT1
Swissprot	Q50EX6	1e-85	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A2G9H5X5	1e-100	A0A2G9H5X5_9LAMI; Transcription factor, Myb superfamily
STRING	Migut.A00867.1.p	1e-98	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	1e-91	myb domain protein 85

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]