PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678461139

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 786aa MW: 84830.5 Da PI: 5.9045

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678461139	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	327.1	3.4e-100	423	784	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 ++L+++Ae +++g+l la+ +Larl+++ sp g+p++R+a+y +eAL+ l+ s+++l+ +++ s+ n ++++ a++ fse+sP+++f++lt NqaI 678461139 423 DQLYKAAELLQTGNLVLAHGILARLNHQLSPIGKPFHRAAFYCKEALQLLLHCSSNNLSLPY-STPRSPLNLVSKIGAYRSFSEISPLVQFANLTSNQAI 521 68************************************************9888877544.444455789************************ PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle.leeLrvkpgEa 201 ea +g+ervHiiDfdi++G+QW++Llq+++++++ +ps+ iT+++sp ++++ el+ t+e+L +fA+e++++f+f+v+ ++l++ + l+ + +Ea 678461139 522 IEASQGSERVHIIDFDIGYGGQWASLLQEFSTQSGCAPSVMITALVSPMTHDQVELSLTRENLIQFAREINISFKFQVVSIDSLSSASwLRPAHSADNEA 621 **************************************************************************9788777764144456666* PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +aVnl + ++ + sl+s vL++vk+lsP++vv v+ +d+++ +F + +++al+ ys+l++sl+a + + ++ +k+Er+ll++ i++++ + 678461139 622 IAVNLPASCLATY--QFSLPS----VLRFVKQLSPRIVVAVDWGCDRTDLPFPNTVIHALQSYSSLMESLDAAANAPLDAIQKIERFLLQPGIEKLILGR 715 *****998888..677777....********************************************99999***************987 PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + e++++Wr++l ++GF+pv++s+++ +qa+++++++++ g++ve+++ slvl+W++++L+s+SaWr 678461139 716 FCS----PEKMQHWRSMLLSVGFSPVSFSNFTDAQAECIIKRTPVAGFQVEKRQSSLVLCWQRKELISTSAWR 784 776....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.047	395	764	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-97	423	784	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MKGMPLAFDF EGKGVLDLEL IVKNQGFFSS GCADFYQGSC FFNNCFVEPT SVLDSVTTPS 60 QLTSSSTLSS SLGGGGGGGG GGAAFTDSAA LALASDANPS SKWQQQDSTT ATSTNAGGSE 120 PGLLPIPTSL EIGGAVGGSR EHPQRFEMDD WNSVLSESAA VSPSQEQAIL RWFMGDVEDT 180 GLGNLNKVFQ TGDGGGGASV MPSAEYGFSG GYGSVDQGFS GNHLGGGLVP ALPVFSSNDN 240 RFSTSKLGIL PSSAPSSLKL SSNSHGLVHP SPVFSSSGSI AFQNQTPFDS PAETKPQTLN 300 SGLQMNQNYQ NTSFVPLSYT QLQEQGSVYL PPQAKKRNFL GMDEDGIRPA GEISKGPFID 360 TGQQEHLMGR FLPFSLQQQV PHPLQWPPHH LPQRPITEEE KPKFVAGKDL ENCHQQQQQA 420 TADQLYKAAE LLQTGNLVLA HGILARLNHQ LSPIGKPFHR AAFYCKEALQ LLLHCSSNNL 480 SLPYSTPRSP LNLVSKIGAY RSFSEISPLV QFANLTSNQA IIEASQGSER VHIIDFDIGY 540 GGQWASLLQE FSTQSGCAPS VMITALVSPM THDQVELSLT RENLIQFARE INISFKFQVV 600 SIDSLSSASW LRPAHSADNE AIAVNLPASC LATYQFSLPS VLRFVKQLSP RIVVAVDWGC 660 DRTDLPFPNT VIHALQSYSS LMESLDAAAN APLDAIQKIE RFLLQPGIEK LILGRFCSPE 720 KMQHWRSMLL SVGFSPVSFS NFTDAQAECI IKRTPVAGFQ VEKRQSSLVL CWQRKELIST 780 SAWRPH

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MKGMPLAFDF EGKGVLDLEL IVKNQGFFSS GCADFYQGSC FFNNCFVEPT SVLDSVTTPS  60
QLTSSSTLSS SLGGGGGGGG GGAAFTDSAA LALASDANPS SKWQQQDSTT ATSTNAGGSE  120
PGLLPIPTSL EIGGAVGGSR EHPQRFEMDD WNSVLSESAA VSPSQEQAIL RWFMGDVEDT  180
GLGNLNKVFQ TGDGGGGASV MPSAEYGFSG GYGSVDQGFS GNHLGGGLVP ALPVFSSNDN  240
RFSTSKLGIL PSSAPSSLKL SSNSHGLVHP SPVFSSSGSI AFQNQTPFDS PAETKPQTLN  300
SGLQMNQNYQ NTSFVPLSYT QLQEQGSVYL PPQAKKRNFL GMDEDGIRPA GEISKGPFID  360
TGQQEHLMGR FLPFSLQQQV PHPLQWPPHH LPQRPITEEE KPKFVAGKDL ENCHQQQQQA  420
TADQLYKAAE LLQTGNLVLA HGILARLNHQ LSPIGKPFHR AAFYCKEALQ LLLHCSSNNL  480
SLPYSTPRSP LNLVSKIGAY RSFSEISPLV QFANLTSNQA IIEASQGSER VHIIDFDIGY  540
GGQWASLLQE FSTQSGCAPS VMITALVSPM THDQVELSLT RENLIQFARE INISFKFQVV  600
SIDSLSSASW LRPAHSADNE AIAVNLPASC LATYQFSLPS VLRFVKQLSP RIVVAVDWGC  660
DRTDLPFPNT VIHALQSYSS LMESLDAAAN APLDAIQKIE RFLLQPGIEK LILGRFCSPE  720
KMQHWRSMLL SVGFSPVSFS NFTDAQAECI IKRTPVAGFQ VEKRQSSLVL CWQRKELIST  780
SAWRPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-33	439	784	21	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678461139

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090295.1	0.0	scarecrow-like protein 6
TrEMBL	A0A2G9GWL5	0.0	A0A2G9GWL5_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400066799	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-125	GRAS family protein