PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460858
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bZIP
Protein Properties Length: 309aa    MW: 33668.3 Da    PI: 6.6114
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460858genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.8e-10147201559
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                kr++r   NR +A rs +RK  +i eLe+kv++L+ae ++L  +l   +     l
  678460858 147 KRAKRILANRHSAARSKERKVRYISELERKVQTLQAEATTLSAQLTLFQRDTRGL 201
                9****************************************99988776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-14143207IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.266145208IPR004827Basic-leucine zipper domain
PfamPF001709.0E-9147201IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-8147201No hitNo description
SuperFamilySSF579593.38E-10147198No hitNo description
CDDcd147034.31E-23148197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMQDPNSKEP RSHAPPHYGA MRAGHHRRAH SEFNFRLPED VDLGSAQLDE PAGSFEEMGS  60
EDDLLSTYMD IETLCGGSGF ADSGSDNVGC GGSAPERDKR GGIRPRHRYS NSVDGSSLLL  120
GESTSSIEAK KAMPPDKLAE LWTIDPKRAK RILANRHSAA RSKERKVRYI SELERKVQTL  180
QAEATTLSAQ LTLFQRDTRG LSKENTGLKL RLQAMEQQAQ LRDALNEALK QEVERLRIAT  240
GEASHGPDPF TFAPYNQPGN FPSQPSDGTS TAAAVSSRQH DALGRFRALG IGNTGEEASV  300
SAMESGTTF
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076587.11e-122transcription factor RF2b
SwissprotO228732e-91BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A2G9GG821e-125A0A2G9GG82_9LAMI; Uncharacterized protein
STRINGMigut.F01247.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34252349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-89bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]