PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460572
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 203aa    MW: 22159.9 Da    PI: 5.396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460572genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-182373155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr ++ +g+Wv+eIr p++   ++r++lg++ tae+Aa+a++ a+++++g
  678460572 23 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTYSTAEMAARAHDVAALSIKG 73
               68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-132373IPR001471AP2/ERF domain
SMARTSM003808.6E-372487IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-212482IPR016177DNA-binding domain
PROSITE profilePS5103223.1032481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-322482IPR001471AP2/ERF domain
PRINTSPR003679.1E-112536IPR001471AP2/ERF domain
CDDcd000181.74E-312583No hitNo description
PRINTSPR003679.1E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGDDRPVERR GKKRARDRGT KHPVYRGVRM RSWGKWVSEI RQPRKKTRIW LGTYSTAEMA  60
ARAHDVAALS IKGSAAVLNF PHLRGTLPLP ESQSPSDVQA AAAKAAAMEE IRASPNCSSS  120
PENSGPASCE EDNEELGEII ELPSLEGNDE LRGEFPAADP MEGWLQPPWC AADKDLWEYF  180
PDQVGAGGGL PITCSFLMTN LAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201582573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460572
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022843034.12e-67dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD35e-48DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2G9HTV62e-68A0A2G9HTV6_9LAMI; Uncharacterized protein
STRINGXP_009596664.19e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.12e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]